Chlamydotis macqueenii (Macqueen's bustard): 104476611
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Entry
104476611 CDS
T08437
Symbol
PCF11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmac
Chlamydotis macqueenii (Macqueen's bustard)
Pathway
cmac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104476611 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmac03021
]
104476611 (PCF11)
03019 Messenger RNA biogenesis [BR:
cmac03019
]
104476611 (PCF11)
Transcription machinery [BR:
cmac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104476611 (PCF11)
Messenger RNA biogenesis [BR:
cmac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104476611 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
104476611
NCBI-ProteinID:
XP_010114765
LinkDB
All DBs
Position
Unknown
AA seq
1632 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTVASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKSKPSPSPPLHDMKIVNRDPRLNRVSQHSSHSKDQSH
RKEFPPNTTSQSDTKANKTTQAEKQNSSKQEKLKASEKIQKKDLDQSEAKSKSPSPLKNK
LPNTKDSKTQECESTKTSEISKRDPRLKRHLQDKSEGKEEEGKEXVEKKEKEEHKTSEHR
PVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSTRKRSRSRSPKARSPSTHSPKRRERR
SPKRRLRSLSPTSSTPKAAKIRQIGPKQSHVEEGTQAARDERNSSKRNVKQEVRDPRRVK
KAQEDRPQETASPHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQALGKS
PHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSGEI
TQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLKR
TQVQHSLSRLDLLDPDDILDYHLPDALLSGIDCEQAKAKRGVQFDRKEPFGERSRRHSPV
SGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESDEFRDALRQQGKSTAE
FQKIDGDAICRFENREERQLLAKAGVREEPRSPFSERFKRGRYDDPEKAPFPESPGSRFG
GIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAPGSSSRIDGPAGQTAMR
FEGPLVGAGASQFDGPLAGAGGAGALRFDGPGQLAGALRFEGPPGQVGGGGPLRFEGPLG
QIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPLGPRGQPVGG
LRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPSGGG
LRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGCHPA
GFDGQPGQLSLLQRFDGIHGQPGPRFERTPGQQAQPRFDTAIPQRFDGPHQPASRFDLPL
GLQGARFENVANHPASRLELSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDLFDGSPGPNF
NGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFSNMPMGSNQVSLMSAQPGPYGQGQQYL
PNPGGFVQNPAGAVPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSAQP
AAEEEDDDHEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADH
LDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQ
EAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYED
YQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPA
STEIKTEPEESV
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcgttagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataagacagcaattgcttgcgaagcaaaagcag
ttgttagaacttcagcaaaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaaggatcatctactgtagcttcggttccagcaccttcc
aagcaacacatgtctcccacacctcatatgacagttaaaccacctcatcagactgctgtg
caatccgaaaaaagcaaaccatccccaagtcctccacttcatgatatgaaaatagtaaat
agggatcctcggcttaatagggtgtctcaacattcttctcatagtaaagatcaatctcat
aggaaggaatttccaccaaacacgaccagtcagtctgataccaaggcgaataaaacaacg
caggctgaaaaacaaaactcatcaaagcaagaaaaattaaaagcaagtgaaaaaatacag
aagaaagatcttgaccagtcagaagcaaaatctaagtcaccatcccctttaaaaaataag
ctacccaatactaaagatagtaaaacccaggaatgtgaaagcacaaaaacatctgaaatt
agtaagcgggatccacgactgaaaagacatctgcaagataagtcagagggcaaagaggag
gaagggaaagaanatgtagagaaaaaagaaaaagaggaacataagacaagtgaacatagg
ccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaggacacaactaca
gaggagtcagaaaagcagggtggaaaacaagggagatcaagtactagaaaacggtcacga
tcacgctctcctaaggcacgatcaccatctacacattctccaaaaagacgagagaggagg
tcacccaagagaagacttaggagtttatcacccacttcatcaactcctaaagctgcaaag
atacgtcagataggccctaagcagtctcatgttgaagaaggcacacaagcagcaagagat
gaacgaaattctagtaagagaaatgttaaacaagaggtgcgagatccgaggagagtgaaa
aaagcccaagaagacaggccccaagaaacagcaagcccgcattctacaaaagcatctcct
gatccaaaagagaatgcagaaaactggcaaggatccaaatcaggcaagaggtggaaatct
ggttgggaagaaaataaaaactcacagcagaatgaagaacaccaagcacttggtaaatcc
cctcatcaaagacaccgggaaaactggcctgctggtaaaggaattctgtcaccccgagca
ccaaagcagcagcaccgattaagtgtggatgccaatttacagattcccaaagaattgaca
tctgcaagcaagagagaattacttaagaaggccaatgaacgcttaacatctggtgaaata
acacaggatgagttcctcatggtagctcatcagatccgacagctgttccagtatcaggaa
ggaaagcacaggtgtaatgtgtgggatagtcctacagaggaaaaatgtggtttgaaaaag
aaacctcttctatcggatgcagaattaacgtattatgaacataaagctaaactgaaaaga
acacaagttcagcattcattgtcaaggcttgatctgttggatcctgatgatattttggat
tatcatttgcctgatgcattactgtctggaatagattgtgagcaagcaaaagccaaacgt
ggagtacagtttgaccgaaaagaaccatttggagaaaggtcaaggagacactctcctgta
agtggcactaatagaccttttgctgataacctctcaccgctcgagagtcgacgaagactt
gaggaacaaaatgctactaaaggagcaagaggttctaagaattttgatccttatgacagc
tggggagaatcagatgaatttagagatgctctcaggcagcaggggaaaagcacagcagag
ttccagaaaatagatggtgatgcaatctgcagatttgaaaatcgtgaagaaagacagctt
cttgcgaaagctggtgttcgagaggaaccaagatcaccattcagtgaacgtttcaaaaga
ggtagatatgacgacccagagaaagcgccgtttccagaaagtccaggatcaagatttgga
ggcattgaagcaaagcagaggataagtgcattaatggaagacagacctctgtttgatggc
tcacctagacaggctgctgcaagggttggggtagatggacaaggaagtccttttgttgat
ggtcctgctcctggttcaagttccagaattgatgggccagctggacagactgctatgaga
tttgaggggcctttggtgggggcaggtgcatctcagttcgatggaccactcgcaggagca
gggggagctggagccctacgatttgatgggccagggcagctggcaggggctctgaggttt
gaaggaccaccaggacaggttggtggaggaggtccattgaggtttgagggacctcttggg
cagatcggtgggcctttgcggtttgaagggcctgcaggacagcctgtaggtggtcctaga
tttgaaggacctggagttggtctcaggtttgagggtccccgtggtcaaccttcaggtggt
ctcaggtttgagggacctcatggtcaacctctgggacctcgaggtcaaccagtgggtggt
ctcaggtttgagggaccccatggtcagccgttggggcctcatggtcaaccagggggtggc
ctcaggtttgaggggccacatttacagcccttggggccccatggtcaacctggaggaggc
ctcagatttgaggggccgcatggtcagcctatgggaccacatggaccgtcaggtggtggg
ctcagatttgaaggaccgcatggaccatcaggtggtgggctcagattggaaggaccacat
ggtcagccaggtgtgggtcctaggttgattgatggcccagtacaccagggagctggtgga
cttagatttgatggtcctctggggcgggccggtccaagatttgatggttgtcatccagct
ggatttgatggtcaacctggacagttatctctcttgcaaagatttgatggaattcatgga
cagcctggtccaagatttgaaaggacgcctggccaacaggcacaaccacgatttgataca
gccatacctcaaagatttgatggacctcaccagccagcctctagatttgacttgcccctt
ggccttcaaggtgcacgttttgaaaatgtagctaaccatcctgcctcaagactagaattg
tcaccatatggacaaggtggtccatttgttgaacatcctggccagggctacaatggacca
tctcatgggatgcaattccagaggcctgatttatttgatggttcgcctggaccaaatttc
aatgggccagctggcccaggagcacagaatttcccactgagagcagctggacattacttt
gatgaaaaaggtcttcagggtcctcaatatgggaacttcagtaatatgccaatggggagt
aatcaggtttctctcatgtctgctcaaccagggccttatggccaaggtcaacaatatttg
ccaaatcctggaggttttgttcagaaccctgcaggagctgttccacattcgtatcctgat
aaccaccttggacagcttgatgtcaatgaattgtttgctaaactgttgtcaacagggatc
ctcaaactgtcaaaaactgattccacttcagcacaagctaatgaaacatcagcccagcca
gctgctgaagaggaggatgatgaccatgaagatcaaaatgttccagacctcactaacttc
acagttgaagaacttagacagcgctatgatagtgttataaatcgactgtacactggaatt
cagtgttactcatgtggaatgagattcactacttcacaaacagatgtttatgcggatcat
ttagattggcattatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacac
agaaggtggtactacagcttaacagactggattgaatttgaagaaatagccgatctagag
gagcgtgcaaaaagccagttttttgaaaaagctcatgaagaggttgtgttgaagacacaa
gaagctgcaaaagagaaggagtttcagagtgtccctgctggaccagctggagcagttgag
agctgtgaaatttgccaagagcaatttgaacaatattgggatgaggaagaggaagagtgg
cacctgaagaatgctatcagagtagatgaaaagatttaccatccatcttgctatgaagac
taccaaaatacatcatcatttgattgcacaccatctcccagcaagactcctgtagaaaat
ccactaaacataatgttgaacattgtcaaacaagaaacacaagagtcctgtgactcacct
aaagtcaaagaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgca
tctacagaaattaaaacagaacctgaagaatctgtttaa
DBGET
integrated database retrieval system
