Chlamydotis macqueenii (Macqueen's bustard): 104478681
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Entry
104478681 CDS
T08437
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmac
Chlamydotis macqueenii (Macqueen's bustard)
Brite
KEGG Orthology (KO) [BR:
cmac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmac03016
]
104478681 (RTCB)
Enzymes [BR:
cmac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104478681 (RTCB)
Transfer RNA biogenesis [BR:
cmac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104478681 (RTCB)
Prokaryotic type
tRNA splicing ligases
104478681 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104478681
NCBI-ProteinID:
XP_010117401
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
GVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYG
FAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPV
GVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKK
RGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDA
LVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAAAGNYAWVNRXXXXXXXXXXXM
TFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPH
HPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLD
FQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ggcgttttctacgtgaacgaccccctggagaaactgatgttcgaggagctgcgcaacgcc
tgccgcggaggaggtgcaggtggctttttgcctgctatgaaacagattgggaatgtggct
gcactacccggcattgttcatagatcaataggccttccagatgtccattctggctatggg
tttgccattggcaacatggctgcctttgatatgaatgatcctgaagcagtggtttcacca
ggtggtgtcggatttgacatcaactgtggtgtccgcttactacgtacaaatttggatgaa
agtgatgtacagcctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgtt
ggtgttggctccaaaggtgtcatccccatgaatgccaaggatttggaagaggcactagag
atgggtgtggactggtctctccgggaaggctatgcctgggcggaggacaaggagcactgt
gaggagtatggaagaatgctgcaagctgaccccaacaaggtctcctcaagagcaaagaag
aggggcttgcctcagctggggaccctgggcgcaggaaatcattatgccgagatccaggtt
gtggatgacatttacaacgagtatgctgccaggaagatgggcatcgaccacaaagggcag
gtgtgcgtgatgatccacagtggcagcaggggactgggccaccaagttgccacagatgca
ttggtggctatggaaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctg
gcatgtgccaggattgcctctgcagagggacaggattacttgaagggaatggcagctgct
ggaaactatgcatgggtcaaccgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctatg
acttttctaacaagacaggcctttgccaaagtcttcaacacaaccccagatgaccttgat
atgcatgttatctatgatgtatctcacaacattgccaaagtggagcaacatgtagtggat
ggaaaggagcggactctgctggttcacagaaaaggatcaaccagggccttccctcctcac
catcctcttattgctgtcgattatcaactgactggacagcctgttttgattggtgggact
atgggcacctgtagctatgttcttactggcacagagcaaggcatgactgagacctttgga
actacttgccatggagctggtcgtgcactatctcgagccaaatctcgacgtaacttggac
ttccaggatgtattggacaagctggctgacatgggcattgccatccgtgttgcttctccc
aaactggtcatggaagaggcaccagagtcttacaagaatgtgacagatgtggttaacacc
tgccatgcagctggcatcagcaagaaagccattaaactgagacctattgctgttataaaa
ggctag
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