Chlamydotis macqueenii (Macqueen's bustard): 104482988
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Entry
104482988 CDS
T08437
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cmac
Chlamydotis macqueenii (Macqueen's bustard)
Pathway
cmac04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmac00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104482988 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmac00536
]
104482988 (COL27A1)
Glycosaminoglycan binding proteins [BR:
cmac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104482988 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
GH131_N
Motif
Other DBs
NCBI-GeneID:
104482988
NCBI-ProteinID:
XP_010122947
LinkDB
All DBs
Position
Unknown
AA seq
1745 aa
AA seq
DB search
MAACSPKGSVLVSRCPRGFCFLWTVLCFTWFLGFTQGNSEDVDVLQRLGLSGKRPSSGWS
SSRTVPQGVIPFKSGVIFTQRARVEAPISTILPAGCSTDLLLVLSLCSHRINNAFLFAVK
SKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAINIRGQTVTLFTSCGKRR
VHADLHFKKDEALDPHGSFLFGKINQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQCRQ
ADTYRPNLPPLIPLLPRDPSASPSTPQHMEPSLQGLKNLTTAATSVEFGRVTAPLKTRGS
AATTIALVSSPPSLPRLTTKVTKVTVASSPVPSSTEMQPSTRSLPRGTGTTLRASWPTTS
THMEKTPLPTAKKAPPTSQSPATASRKESKQETKKTINQKPTIEPSEAPSTVKPMRRMTD
NTTSNVHFVTLKQTPQNPTNGPVPKKHVPSPTRKVDPSNVPLVYTKPPLGSARPVSRARA
QAFNLTTPAATDGYQIFDPLGPTPFPFLLGYPGMKGERGPQGPPGLPGLPGPPGKRGSRG
PPGPHGNPGLPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKGYPG
PPGHPGEQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGPDGERG
IPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGYPG
PKGVKGLMGNPGEHGLKGDKGDQGGAGVPGDIGFQGDKGSQGLPGAPGARGRAGPLGKVG
DKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPG
VPGPEGRSGRKGFPGRPGPDGAKGEPGNRGRPGKVGEQGLMGFIGPVGEPGIVGEKGDRG
SVGPPGPPGVKGSMGHPGTPGGAGFPGIPGPTGPAGVRGAPGMRGMKGRRGARGPDGPVG
EPGSRGVKGRPGEPGKPGPDGLQGKMGDTGETGARGFPGIQGPSGPPGAKGAPGDPGPQG
PQGPPGPLGEIGHKGPPGSIGQPGLAGEPGMKGDPGQLGVPGEQGLIGQRGESGLEGDSG
PPGPDGAKGDKGEQGLEGEKGEKGNEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGKPG
QKGSKGYQGQLGETGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGVQGEPGLKGYQGHAG
PAGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDGER
GKPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGTRGNAGSRGSPGILGLPGPRGVVGRQ
GQEGAPGVDGVPGKDGVPGTLGEQGDDGEEGVTGMAGKRGNPGIPGLPGAQGPPGFKGER
GLPGQTGQTGKRGSPGGTGLPGSPGDPGPKGQPGDFGEAGFPGIAGMFGPKGPPGDLGFK
GIQGPRGPPGLMGKEGIIGPLGIQGPMGSPGPKGDKGSRGETGLQGPRGPPGPRGHPGPP
GPPGIPASFQQDGFGAAFRTLIDSNTALKTEGYQHPDLLMLDHGGEIFKTLHYLSNLIQS
IKRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLSPI
TVSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWQEGSSEKPSEKAVRFKAWNGQM
FEANGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLEVG
PVCFL
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctgctcacccaagggctctgtccttgtgtctcggtgtcccaggggattctgc
tttctctggactgtattgtgttttacctggttcctgggattcacacagggaaattctgaa
gatgtggatgttcttcaaagactgggcctgtcagggaaaaggccatcgagcgggtggtcc
tcatcacgtacagttcctcaaggagtcattcctttcaaatcaggggtcatcttcactcag
cgagcacgcgtcgaagcaccgatcagcaccatcctccccgcgggctgcagcactgacctg
ctcctggtgctgagcctctgctcccaccgcatcaacaatgcttttctctttgctgtcaag
agcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcatcgtgtat
gtgggccacaagcgctctgtatattttgattacaatgtccatgatggccagtggcacaat
atggccatcaatatccgtggccagacagtcactttatttacttcttgtgggaagcgcaga
gtacatgcggatttgcattttaaaaaggacgaggcattggatccacatggatctttcctc
tttgggaagataaaccagcactccgtgcagtttgaaggagccatctgccagttcgatatt
tatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgcaggcaa
gcagatacctaccggccaaacctgccccccctcatccccctcctgcccagggatcccagt
gcctccccaagtaccccacagcatatggagccctcgctgcagggtctgaaaaacctgacc
actgctgccacatccgtggagttcggcagggtcactgcacctctcaagactcggggctca
gctgcaacaaccatcgcattggtatcatccccaccatcactgccaagactgacaaccaaa
gtcacaaaggtcacagtggcctcatctcctgttccatcaagtactgaaatgcagccatcc
acccgttcactccctcgggggacagggacgaccctcagggcatcttggcccactaccagc
acacacatggagaaaactccccttcccactgccaaaaaggccccaccaacaagccagagc
cctgcgacagccagcaggaaggagtccaagcaagagaccaaaaagacgatcaaccaaaaa
ccgaccattgagccctctgaagcacccagtactgtaaagccaatgaggaggatgactgac
aacacaaccagcaatgtccactttgtcactctaaagcaaaccccacagaatccaaccaat
gggcccgttccaaagaagcacgtgccgtcccccaccaggaaagtggatcccagtaacgtc
cctctggtgtacaccaaaccgcccctggggtctgcccgtcccgtttccagagccagggca
caggccttcaacctcacaaccccagctgccactgatggctatcaaatctttgaccccctc
ggacctactccgtttccgtttttactgggatatccaggcatgaaaggagagagaggacct
cagggtccaccaggtctgccgggcttaccaggaccacctggcaagagaggttcccgaggt
cccccaggtccccacggaaaccctggcctacctggccccccaggcctgaagggtcagaaa
ggcgatcctgggctgtcacctggaaaagctcgcaatggacagaagggagacgtgggctta
cctggtttgactgggttccctggaccacctggtagaaagggatataaaggctaccctgga
ccaccaggtcaccctggagagcagggcgaacgaggaccagacggaagtccaggtgccaaa
ggttatcctggcaggcagggtttacctggccccataggggaagccggtccaaaaggcagt
cggggatatattggtctcccaggactatttgggctaccagggcctgatggagaacgaggg
atccctggagttcctgggaagaggggcaagatgggtaggccgggttttcctggtgatttt
ggggaacgagggcctccaggcatcgatgggaacccgggagaattgggagccccaggtcct
cctggagtccttggactcattggtgacatgggctctgttggaccgataggctatccagga
ccaaaaggcgtaaaggggctgatgggaaaccctggagaacatggactgaaaggtgataag
ggtgatcagggaggagcaggtgttccaggagatatcggcttccagggagacaagggcagc
cagggtttgcctggagcccctggggcgcgagggagagcaggccccctgggaaaagtcggt
gacaaaggtccggttgggtttccaggaccacctggccctgagggcttcccaggtgatatt
ggcccaccaggagaaaatgggcctgaaggcctgaagggaaagccaggagcacgaggttta
cctgggccaagaggactgcctggacaagagggagatgaaggacccttaggacccccagga
gtccccggcccagagggtcgatctggccggaagggatttccaggaaggcctggtcccgat
ggtgcaaagggtgagccaggaaaccgtggccgaccagggaaagttggtgagcagggtcta
atgggtttcattggtcccgtaggggagcctggaatagtgggagaaaagggtgaccgtggc
tcagtgggacccccaggccctccaggagtcaaggggtcgatgggacaccccgggacacca
ggaggagcgggttttcctgggatccctggaccaacaggtcccgcaggagtccgtggcgcg
ccagggatgcgagggatgaaaggccgcaggggtgccagagggcccgacggaccagtaggc
gagccggggtcacgaggtgtcaagggccgaccaggggagccaggcaagccggggccagat
gggctgcaggggaagatgggtgacaccggggagacaggagcacgtggcttcccaggtatc
caaggaccttctggacctccaggagcaaaaggggctccaggcgacccgggtccacaagga
ccacaggggccacctgggcctttgggagaaattgggcataagggaccgcctggctcaata
ggacaacctggccttgcaggtgaacctggcatgaagggtgatccgggtcagttgggagtc
cctggagagcaaggcctcattggccaaagaggagaatcggggctggaaggggacagcggg
ccacccgggccggacggtgccaagggagacaaaggagagcaaggcctggaaggagagaaa
ggagaaaaaggcaacgaaggactgaagggaaaagaagggcctcctggctatcccggcatc
acaggtgtccgaggaccagaagggaaaccaggaaaacagggagaaaagggcaagcctggc
cagaagggcagcaagggctaccaggggcagctcggtgagacaggatctccagggaaggag
gggccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatgggtgct
ccaggaaggatgggtgttcaaggggaacctggcttgaagggttaccagggacacgcagga
ccagcagggccaattggaccaccagggccaaagggggaaaagggagaacaaggtgatgac
gggaaggtagaaggcccacagggaccacctggagacagaggtcctgttggtgacagaggt
gatcgaggggagcctggagaccctggttatcctggtcaagaagggcttgatggagaaaga
ggaaaaccgggacagcaaggcttacctggggatcctggaccaccaggccagccaggagca
aagggatccaaaggtgatgtgggccaaaaaggaaagcaaggaacacggggcaatgcaggg
agcagaggctcaccgggcatccttgggctaccgggtcctcgaggagtggtgggaaggcag
ggtcaagagggtgcccctggagtggacggagtgcctgggaaggatggcgtgcctgggacg
ctgggagagcagggtgatgatggggaagaaggtgtgacagggatggcaggcaaaagaggg
aaccctggcataccaggactccccggggcacagggaccaccaggattcaagggtgaaaga
ggattgcctggacagactggccaaacagggaagcgaggatcaccaggaggaacaggcctt
ccagggagccctggcgatccgggacccaaaggacagccgggagactttggcgaggcagga
tttccagggattgcgggcatgtttgggccgaagggccccccaggagaccttggtttcaaa
ggcattcagggaccacgtgggccacctggtctcatgggaaaagaaggaattattggtcca
cttggcattcagggtcccatgggaagccccgggcccaagggagacaaaggcagccgcgga
gaaacgggtctgcaaggtcccaggggtcctccaggcccacgaggacaccctggccctccg
ggaccgccaggaattccagcctcatttcaacaagatggctttggagcagctttccggaca
ctaatcgactcgaacaccgcgctcaaaacagagggctaccaacatccagaccttctcatg
ctggaccatggaggggagatctttaagactctacactacctcagcaacctcattcagagc
atcaaaagacccctgggaaccaaggaaaaccctgcacgcatctgtcgagacctcatgaac
tgtgaacagaagatgaatgatggtacctactggattgacccaaatcttggttgttcctca
gacaccatacaggtcatatgtaacttcaccaatggtgggcagacgtgtctcagccccatc
actgtctccaagctggattttgacatcggtcgagtccagatgaacttcctccgcctcctg
agctcagaggtggtgcagcacatcaccatccactgcctgaatacctccgtctggcaggaa
ggctcatctgagaaaccttcggaaaaagccgtgcgcttcaaggcctggaacggacagatg
tttgaggcaaacgggcagctcaggccagaagtggcagctgatgattgcaagatcaaggat
ggacgctggcatcggactctcttttcgtttcggacgcaggaccctcagcagctaccaatt
gtcaacatctacaaccttcccccatccgagccaggaaagcaataccacctcgaggttggc
cccgtgtgcttcctttga
DBGET
integrated database retrieval system
