Pacificitalea manganoxidans: CBW24_15175
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Entry
CBW24_15175 CDS
T05128
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cmag
Pacificitalea manganoxidans
Pathway
cmag03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cmag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBW24_15175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmag03400
]
CBW24_15175
Enzymes [BR:
cmag01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CBW24_15175
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CBW24_15175
DNA repair and recombination proteins [BR:
cmag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CBW24_15175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ATI43216
UniProt:
A0A291M2M3
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All DBs
Position
3306115..3306966
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLLPAMEDHVISATEIRREGLRWPFPEGMCRRLTGARVHRLRRRSKYL
LADLSTGETLLIHLGMSGRMMVSGLATARFVHDHPAPQKHDHVVLHMSNGARVTFNDPRR
FGAMDLMATERAGEHMLLRDLGPEPLGNQFDGPYLADRLAGRATPIKSALLDQRIVAGLG
NIYVCEVLHRAGISPRRKAGNLSRDRAAALVPIIREVLQEAILAGGSSLRDYRQADGDLG
YFQHTFRVYGREGAPCVTPECTGQVQRIVQSGRSSFFCGHCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgaattacccgaagtcgagacggttcgtcgcggcctgctgcccgctatggaagac
catgtgatctccgccacggaaatccgccgtgaggggctccgctggccgtttcccgaaggc
atgtgccgcaggctgacgggcgcacgggtgcacaggctgcggcggcggtcgaaatatctg
ctggccgatctgtccacgggcgagacgctgctgatccatctgggcatgtcgggacggatg
atggtgtcggggctggccaccgcgcgctttgtccacgaccaccccgccccgcagaaacat
gaccatgtggtgctgcacatgtcgaatggcgcgcgcgtgacgttcaacgatccgcggcgt
ttcggtgcgatggacctgatggcgacggagcgcgcgggcgagcacatgttgctgcgcgac
ctcggccccgagccgctgggcaaccaattcgatgggccctatctggccgatcggctggcg
gggcgcgccacaccgatcaagtccgcgctgctggaccagcggatcgtcgcggggctgggc
aatatttacgtgtgcgaggtgctgcaccgggcgggcatctcgccccggcgcaaggcaggc
aacctgtcccgggaccgcgccgccgcgctggtgcccatcatccgcgaggtgttgcaggaa
gccattctggcgggcggatcgtccctgcgcgattaccggcaggccgatggggatctgggc
tattttcagcatacattccgggtctatggccgcgaaggcgcgccctgcgtcacgcctgag
tgcacgggacaggtccagcggatcgtccaatcggggcggtcgtcattcttctgcggccat
tgccaaagatag
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