Clostridium manihotivorum: C1I91_03075
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Entry
C1I91_03075 CDS
T08006
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmah
Clostridium manihotivorum
Pathway
cmah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1I91_03075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmah03400
]
C1I91_03075 (mfd)
Enzymes [BR:
cmah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1I91_03075 (mfd)
DNA repair and recombination proteins [BR:
cmah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1I91_03075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QAA30733
UniProt:
A0A3R5QRM1
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All DBs
Position
708981..712499
Genome browser
AA seq
1172 aa
AA seq
DB search
MRLNGLMEPLTINPNFQKVRSNIDKDKYPFSISGVSESGKGYLINGIFENNDRSIVVITH
NDVEAKNLYEDLSLYTTDVYYFPSKEIVFYNIDAVSGDLRWARLKVLKEILDKKKKIVIV
SVESFATIYTPKELYISHTFKIKVGDEVDFKEFSKNLIECGYERMDIVDGKGQFSVRGGI
MDIYPPNTALPYRIELFGDEVDSIRFFNIESQRSIDKVKEVEVFPAKEIILDDDTIQKAI
VKINDELSSFIKSRDNSEKDIISRISSVIKSNVENLRESWSFETIESYLPLFFNKPSSFF
DYFKDYLMIMDDDQRCNGKLDSVIYEFEENYTAFLQRGDILPSQANLILGKDILSEKFNS
SRIITVNPFTKNSEFIHTYDTVAFSQLTLHNYQGKIDMLIDDIKEKKKKGYKTVILSGTR
PRGERLVDTLRDRDIESVYKDVVNDIQFGEVVITFGNQLKGFEYTDMKICVISDKEVFGE
AKRKSSRKATKQKGVSKIKSFAELKLGDYVVHANHGIGVYKGIKQIDVSGHKRDYLDIEY
AKGDKLYVPVDQLDLVQKYIGTEGKAPKINKLGSSEWQKAKAKVKKSINEIAQDLVKLYA
TRSTLKGHKFTIDTQWQNQFEEEFPYEETPDQLTALEDIKSDMESDKIMDRLLCGDVGYG
KTEVALRAAFKAVMDGKQVALLVPTTILADQHYNNMVKRFSDFPIKIDMVSRFRTSKQQK
ETLQAVKEGNVDILVGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKNIKRNVDVLT
LSATPIPRTLHMSLTGVRDISVIETPPEERYPIQTYVVEQNDQLIRDAILREINRGGQVF
FVYNRVESIMEMSDYIQNLVPECKTTVIHGQMTERQLENEMISFMNNESNVLICTTIIET
GIDIPNVNTIIVYDSDKMGLSQLYQLRGRVGRSNRIAYAYFVYKKDKILTEVAEKRLRAL
KDFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMASVGYDLYCRMLEDTIKIIKGEIEQE
PVETSIDIKVDAFIDSRYIEDELQKIEVYKKIAAIESIEDYMDVKEELEDRFSEIPEPVY
NLMDIAYIKSKARNLGIEDVKEKQGEVLFQFQSRDRVKKDIFKRLLEQYKNNIIIRMGDK
PSFGYKLKDTKREDILPTLKNMLDNLNKEISK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaatggccttatggagccattgacaattaatcctaactttcagaaggttaga
tcaaatatagacaaagataagtacccattttctatatctggtgtgtctgagtctggaaaa
ggatatttaataaatggtatttttgaaaataatgatagatctatagttgtaattacgcat
aatgatgtagaagcaaaaaatttatatgaggatttatcactatatactacagatgtatat
tactttccttcaaaagaaattgttttttataatattgatgccgtttctggagatttaaga
tgggctagattaaaagtacttaaagaaattttggataagaaaaaaaagatagtaatagta
tcggttgagagtttcgctacaatttatacgccaaaggaattgtatataagtcatactttt
aaaataaaagtgggagatgaagttgactttaaagaattctctaagaatttaatcgagtgc
ggatatgaaagaatggatatagttgacggtaaaggtcagttttcggtaagaggaggtata
atggatatatatcctcctaatactgcgcttccatatagaatagagctctttggggatgag
gttgactctataaggttttttaatattgaaagtcaaagaagtatagataaagtaaaagaa
gttgaggtgtttcctgctaaggaaataatccttgatgatgatactatacagaaggctata
gtgaaaattaatgatgaactgtcaagttttataaaatccagagataacagcgaaaaagat
attatttcaaggatatcatcggtaattaaatctaacgtagagaatcttagggagtcatgg
tcctttgaaactattgagagttatttgccgcttttctttaataaaccttcttcgtttttt
gattattttaaagattatcttatgattatggacgatgatcaaaggtgtaatggaaaactt
gatagtgtaatatatgaatttgaagaaaactacactgcatttttacaaaggggagatata
ttaccgtctcaggcaaatttgatattagggaaagatatcttaagtgagaagtttaattct
tctaggattataacagtaaatccatttactaaaaacagcgaatttattcatacttatgat
acagtagctttttctcagcttacattacataactatcaaggaaaaatagatatgttaata
gatgatattaaagagaaaaagaaaaagggctataagacagtaatattatcagggactagg
ccaagaggggaaagacttgtagatacattaagagatagggatattgaaagcgtttataaa
gatgtagttaatgatatacaatttggagaagttgtaataacctttggaaatcagctaaaa
ggctttgaatatacagatatgaaaatatgtgtaatatctgataaggaggtttttggagaa
gctaaaaggaaatcttcaagaaaagcaaccaagcagaagggcgtatctaagataaagagt
tttgctgaacttaaactaggagactatgtagttcacgctaatcatggtattggggtatat
aaaggaattaaacaaatagatgtcagcggacataagcgagattacttggatattgagtat
gctaaaggtgataagctttatgtacctgtagatcaattagatctggttcagaaatatatt
ggtactgaaggtaaggctccgaagattaataagcttggctccagtgaatggcagaaagct
aaggctaaagtaaagaaatctattaacgaaatagcacaagacctagtgaagctatatgca
acaagatctacattaaaaggccataagtttactatagatactcaatggcagaatcaattt
gaggaggagttcccatatgaggagactccagatcaattaactgctttagaagatataaag
agcgatatggagtccgacaagataatggatagattattatgtggagatgttggatatggg
aaaactgaagttgcattaagagcagcttttaaagcagttatggatggcaagcaggttgct
ttacttgttccaaccactatattagcagatcaacactataataatatggttaagagattt
tctgattttcctataaagattgatatggtatctagatttaggacttcaaaacagcagaag
gaaactttacaagcagtaaaagaaggaaatgtagatatattggtaggtactcatagatta
gtttctaaagatattcaatttaaagatttggggcttctaattgtagatgaagaacagaga
tttggagttgcccaaaaggagaaaataaaaaatataaaaagaaatgttgatgttcttact
ttaagtgctacgcctatacctagaacattacacatgtctcttacgggggtgagagatata
tctgttattgaaactccacctgaagaaaggtatcctatacagacttatgtggtagaacaa
aatgaccaactgattagagatgctattttgagagaaataaatagaggtggtcaagttttc
tttgtatataatagagttgaaagtattatggaaatgtccgactatattcaaaacttggtg
cctgagtgcaaaactactgttattcatggacagatgacagagagacagctagaaaatgaa
atgatatcctttatgaataatgagtctaatgtacttatatgcactacaataattgagaca
ggtatagatatacctaatgtaaatacaatcatagtatatgattctgataaaatgggatta
tctcaactctatcaattgagaggaagagtaggtagaagtaataggatagcatacgcttat
tttgtatataaaaaggataagatattgactgaagtagctgagaaaaggttgagagcactt
aaggactttactgaattaggctctggttttaaaatagccatgagagatcttgagataaga
ggtgctggtaatatgatggggtcagctcaacacggtcatatggcttcagttgggtatgat
ttgtattgcagaatgctggaagataccattaaaattataaagggtgagatagaacaggaa
cctgtagaaacttcgattgacataaaggtagatgcctttattgactctagatatattgag
gatgagttgcagaagatagaggtctataaaaagatagctgccatagaaagcatagaagat
tatatggatgttaaagaagagcttgaggatagattctcagagatacctgaaccggtttat
aacctaatggatatagcttatattaagagcaaggctagaaacttggggatagaagatgtt
aaagaaaagcagggagaggtattgttccaatttcagagtagagatagggttaaaaaggat
atatttaagcgattgttggaacaatataaaaataatataataattagaatgggagataag
ccatcctttgggtataagttgaaggataccaaaagagaggatatacttcctacgcttaaa
aatatgctagacaatctaaataaagaaatcagcaaataa
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