Clostridium manihotivorum: C1I91_03190
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Entry
C1I91_03190 CDS
T08006
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmah
Clostridium manihotivorum
Pathway
cmah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1I91_03190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmah03019
]
C1I91_03190
03009 Ribosome biogenesis [BR:
cmah03009
]
C1I91_03190
Enzymes [BR:
cmah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1I91_03190
Messenger RNA biogenesis [BR:
cmah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1I91_03190
Ribosome biogenesis [BR:
cmah03009
]
Prokaryotic type
rRNA helicases
C1I91_03190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
Hyccin
AAA_22
Rep_fac_C
Motif
Other DBs
NCBI-ProteinID:
QAA30748
UniProt:
A0A3R5UDF7
LinkDB
All DBs
Position
730791..732449
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AA seq
552 aa
AA seq
DB search
MEKMIFNELNCSEEIKRAITDMGFTEATPIQALAIPVVMQGIDMVGLAQTGTGKTAAFGI
PTIDKIDTTTKELQVLVLCPTRELAVQVSEEFEKLSKYKRNLEVLAVYGGDSMERQIRGL
RRGAQIVVGTPGRVMDHMRRGTVKLGSLKVLILDEADEMLNMGFREDIEEIMSTIDQPVQ
KLLFSATMKKNILDIVKKHLKDPKMIKVENKELTTPNISQMYVEVKEQDKLEVMTRLIDM
YNPKLSLIFCNTKSKVDEIEEKLLNKGYNISKIHGDMKQSVRSSVIQRFKQGNIKILIAT
DVAARGLDIDDVEMVFNFDVPQHEEHYVHRIGRTGRAGREGKAFTMVTGRQMRDLRDIMT
YTKKKMKLHNIPTLKDVRKAKVKKFVDILQEDMKSDEFKKYLTIVEKMEEEGYSAKDIAA
ALLQRELNFTERDDVDMNPSASSSRSEDFERRRTPRTAGSSREEGMVRMFVNIGRDKNLK
PEHLVRAIASEVGIPGRSIGAIDIYEKYTFVEVPEQYSNQVLEVMNKVKINGVRINVEVA
QKKGTKRKRDFN
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgatatttaatgagctaaactgctcagaagaaataaaaagagctattacc
gatatggggtttacagaggctactccaatacaagctttagctataccagtagttatgcaa
ggaatagatatggtgggcttagctcaaacaggtactggaaagactgcagcttttggaata
cctactatagataaaattgatacaacaactaaagagttacaagttttagttttgtgtcct
actagagaactagctgttcaagttagtgaagaatttgaaaagttatcaaagtataaaaga
aacttagaagttttagctgtgtatggcggagactcaatggaaagacaaataagagggctt
agaagaggagctcaaatagttgttgggactcctggaagagttatggaccatatgagaaga
ggtacagtaaaacttggctctttaaaagttctaatattagatgaagcagatgaaatgctt
aatatgggatttagagaagatattgaggagataatgtctacaatagatcagccagtacag
aagttattattctcagctactatgaagaagaatatattagatatagttaaaaaacattta
aaagatcctaagatgatcaaagttgaaaacaaggaattaaccactccaaacatttctcaa
atgtatgttgaagttaaggaacaggataagttagaagtaatgacaagacttatagatatg
tataatcctaagctttcattaattttctgtaatactaagagcaaggtagatgaaattgaa
gaaaagcttcttaataagggatacaatataagtaagatacatggtgatatgaagcagtct
gtaagaagcagtgttattcaaagatttaagcaaggaaacattaaaatacttatagctaca
gatgttgctgctagaggattagatatagatgatgttgaaatggtatttaattttgatgtt
cctcaacatgaagaacactatgttcatagaataggtagaactggaagagctggaagagaa
ggaaaagccttcactatggttactggaagacaaatgagagatcttagagacataatgact
tatacaaagaagaagatgaagcttcacaatatacctacattgaaagatgttagaaaagct
aaggttaaaaagtttgtagatatattacaagaagatatgaagagtgatgaatttaagaaa
tacttaactatagttgaaaaaatggaggaagaaggatattcagctaaggatattgcggca
gctttattacaaagagagcttaactttactgaaagagatgatgttgatatgaatccatct
gcatcttcatcaagaagtgaagactttgaaagaagaagaactccaagaactgctggatca
tctagagaagaaggaatggttaggatgtttgttaacataggaagagataaaaatcttaag
ccagaacatcttgtaagagctatagctagtgaggttggtataccaggaagaagcattgga
gctatagatatatacgaaaagtacacatttgtagaagttcctgagcaatattcaaaccaa
gttttagaagttatgaacaaagtgaagataaatggcgtaagaattaatgtagaggttgct
cagaaaaaaggaactaagaggaaaagagacttcaactaa
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