Clostridium manihotivorum: C1I91_03935
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Entry
C1I91_03935 CDS
T08006
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmah
Clostridium manihotivorum
Pathway
cmah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1I91_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmah03019
]
C1I91_03935
03009 Ribosome biogenesis [BR:
cmah03009
]
C1I91_03935
Enzymes [BR:
cmah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1I91_03935
Messenger RNA biogenesis [BR:
cmah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1I91_03935
Ribosome biogenesis [BR:
cmah03009
]
Prokaryotic type
rRNA helicases
C1I91_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QAA30880
UniProt:
A0A3R5QW37
LinkDB
All DBs
Position
884561..886006
Genome browser
AA seq
481 aa
AA seq
DB search
MSNFSFEELGISGELVEALHKLGYRNPSKVQQQVIPKALENSDIIVKAQTGSGKTASFGI
PLCETVDIEERSPQALILTPTRELCVQVKEEISNIGRLKKVKAVAVFGKQPFSDQARDLK
QRTHVVVGTPGRTLDHIDRGTIVLDKVKYFIIDEADEMLNMGFIDQVEQVMKKLPKDRVT
MLFSATISEQIDVLCRKYMKDPIKIEINPERITTERIKHVCYKVGYDYKFNLLKDILITE
NVDSSIIFCSTKENVDEVSEKLKAQGFPCSKLHGGMMQAERLEVINSFKRGYFRLLVATD
VAARGIDVQDVTHIINYDIPMEKESYVHRIGRTGRAGKQGKAITFVNSFDNRFLLQIEEY
LGFSISKEEMPSKDLVFNMKKAFLEKLNSKPVLKKDKSSELNKQIYKIYINAGKKKKIRP
GDIVGAILNIEGISSDDIGIIDIQDGFSYIDILNGKGNTVLEGLNTSNIKGKAVKAQRAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattttagttttgaagaattaggaattagtggagaactagtagaggcgttacac
aagttggggtacagaaatccttctaaggttcagcagcaggtaatacctaaggcgctagag
aatagtgatataatagtaaaggctcaaactggaagtggaaagactgcttcctttgggatt
cctttatgcgagacagttgatatagaggagaggagtccgcaagctttaatattgactccc
actagagaactctgcgttcaggtaaaagaagaaatatcaaacataggaagactaaaaaag
gttaaggctgttgcagtatttggaaagcagccctttagtgatcaagcaagggatctcaag
cagaggacacatgtagtagttggaactccaggaagaaccttggatcatatagatagaggg
acgatcgtattagataaagtaaaatattttattatagatgaagccgatgaaatgctaaat
atgggatttatagatcaggtggagcaagttatgaaaaagcttcctaaggacagagttact
atgcttttttcagcaactatatctgaacagatagatgtgttgtgtagaaagtatatgaag
gatcctataaagattgaaattaatcctgaaagaataactacagagagaatcaaacatgtt
tgctacaaagtaggatatgactataagtttaatttattaaaagatatattgataacagaa
aatgtagatagttcaataatattctgtagtaccaaagaaaatgttgatgaagtcagtgaa
aagcttaaagctcaaggatttccgtgcagtaaacttcatggaggcatgatgcaagcagaa
agattagaggttattaatagttttaaaagagggtattttagacttttagtggctactgat
gtggcagctagaggtatagatgtccaagatgtaactcatataataaactatgatatacca
atggaaaaggaaagttatgtgcatcgaataggaaggactggccgtgctggcaagcaaggt
aaggcaataacctttgtgaatagctttgataatagattcttgctacagattgaagagtat
ctaggatttagtatttctaaggaagagatgcctagcaaagacttagttttcaatatgaaa
aaagcttttttagaaaagcttaattctaagccagtattaaaaaaggataaaagcagtgag
ctaaataaacaaatatataagatatatataaatgcaggaaagaagaagaagataagacct
ggagatatagttggagctattcttaatatagagggaattagcagtgatgatataggaatt
atagacattcaagatggattctcttatatagatatacttaacggaaaagggaatacagta
ttagaagggttaaatacatcgaacataaaaggtaaggctgttaaggctcaaagagcaaaa
aaatag
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