KEGG   Clostridium manihotivorum: C1I91_08560
Entry
C1I91_08560       CDS       T08006                                 
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
cmah  Clostridium manihotivorum
Pathway
cmah02020  Two-component system
cmah02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cmah00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C1I91_08560
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    C1I91_08560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmah03021]
    C1I91_08560
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:cmah02035]
    C1I91_08560
Transcription machinery [BR:cmah03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C1I91_08560
Bacterial motility proteins [BR:cmah02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    C1I91_08560
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 UPF0122 HTH_23 Sigma70_ECF PhyR_sigma-like TPR_1 UIM Phage_terminase TPR_19
Other DBs
NCBI-ProteinID: QAA31694
UniProt: A0A410DRG3
LinkDB
Position
1911254..1911979
AA seq 241 aa
MAVQGALAYRDKIVEKYIPLVKYIASRVILGKSKYVEYDDLVGYGMVGLMDAMNKFDESK
GMKFSTYASIRIKGAMIDEIRRNSPISKGAMDKLNRYNEAIDSLQKSLGREPGNEEIAKA
LNMSLEDVGEVENYINYISVVSLENIIFSEDDDISIMGIIEDKNSPSPEKTLEEKEEVEV
LSKALGLLNEKDGIVLSLYYYEGLTLKEIGKVLEVSESRVCQLHSRAIRNLRAAMKKLHY
I
NT seq 726 nt   +upstreamnt  +downstreamnt
atggcagtgcaaggtgctttagcgtatagagataagatagtagagaaatacataccactg
gttaaatacatagcatctagagttattcttggaaagagtaaatacgtggagtatgatgat
ttagttgggtatggtatggtaggtcttatggacgctatgaataaatttgatgagagcaag
ggaatgaagttttcaacttatgcttcaataagaattaaaggtgctatgattgacgagata
agaagaaacagtccaatttctaaaggcgctatggataaacttaatagatataatgaagct
atagactctcttcaaaaaagcttaggcagagaaccaggcaatgaggaaatagctaaagca
ctaaatatgtccttagaggatgtaggcgaagtagagaactatataaattacatatcggtt
gtatccttagaaaatataatattttctgaagacgatgatatctctattatgggtattatt
gaagataagaacagtcctagtccagaaaagactttagaagaaaaagaagaggtagaagta
cttagtaaagctttagggcttctaaatgaaaaagacggtatagtgttaagtctatattat
tatgaagggcttacgcttaaggaaataggcaaggtactagaggtatctgagtctagagta
tgtcaattacatagtagagctataagaaatcttagagcagcaatgaagaagcttcattac
atataa

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