Cobetia marina: BFX80_00570
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Entry
BFX80_00570 CDS
T04789
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmai
Cobetia marina
Pathway
cmai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BFX80_00570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmai03021
]
BFX80_00570
03400 DNA repair and recombination proteins [BR:
cmai03400
]
BFX80_00570
Enzymes [BR:
cmai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BFX80_00570
Transcription machinery [BR:
cmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BFX80_00570
DNA repair and recombination proteins [BR:
cmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BFX80_00570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
DUF7129
Motif
Other DBs
NCBI-ProteinID:
AOM00085
LinkDB
All DBs
Position
134987..139228
Genome browser
AA seq
1413 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMAHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLEKGHLLNDEQYFEALEEFGDDFDARM
GAEAIKALLEDIELEEEVERLREEIPQTNSETKIKKLSKRLKLLEAFYYSGNKPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGHASTIKAAKKMVEREAPEVWDFLADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAKGEGMAFANLGEVERAFGTH
SAHLHAMVKVRLTETLKDEESGELYEKTSLHDTTIGRALLFRILPKGMPFELINQVMKKK
AISGLINEAYRRVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKKVIIDAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDRVAKEMMAGISKETVVNWKGEVVNGEDG
KPMEQESFNSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITEADCGTQEGLILHPVIEGGDI
IVPLSQRVLGRVVAQDVVDPVSDEVLIARGTLLDEAWCAQLDTMGVDEIIVRTTIGCETV
HGVCSACYGRDLARGHQVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQ
VKHGGHVRLHNIKSVERADGKLIVVSRSSALAVADDHGREREFYKLPYGAELSVRDGDKV
ESGQSVAKWDPHTHPIVAEVAGQVQFTDMEDGQTINRTTDEMTGLSSIEVIESASRPSAA
RDKRPMIMLVDSSGKHVTLPGSNTPVQYLLPGNAVVSAENGAAVGVGDVIARIPMEASGN
KDITGGLPRVADLFEARRPKEPAILAEISGTVTFGKETKGKRRLTITPAEGDPFELLIPK
WRQISVFEGETVEKGEVISDGPSNPHDILRLLGVAEMTKYITTEVQEVYRLQGVGINDKH
IEVIVRQMLRKVEITDSGDSSFITGDQVEYARVVEENMRLEAEGKFPAKFDRILLGITKA
SLATESFISAASFQETTRVLTEASVTGKRDYLRGLKENVVVGRLIPAGTGLAYHDERRRR
RDGLPLAPAPSAQDVEQELGAQLTALDADDDDL
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagttctcaaatcgcaggcgcagtccgaagaattcgacgccatc
aagattaccctggcgtctccggacatgattcgctcgtggtcttttggtgaagtgaagaag
cctgaaaccatcaactaccggacattcaagccggaacgtgatggtcttttctgtgccaag
atctttggcccggtgaaggactacgagtgcctgtgtggcaagtacaagcggatgaagcat
cgcggcatcatctgtgagaagtgtggcgttgaagtgaccaaggcggcagtgcgtcgtgag
cgtatggctcacatcgaactggccagcccggtcgcgcacatctggttcctgaagtcgctg
ccgtcccgtatcggcatgctgctcgacatgactctgcgtgatatcgagcgtgtgctgtac
ttcgaaagcttcgtggtcatcgatccgggcatgacgaccctcgagaagggtcatctgctc
aatgatgagcagtacttcgaggcgctggaagaattcggcgatgacttcgatgcccgcatg
ggtgccgaggccatcaaggcgctgctcgaggacatcgagctggaagaagaggtcgagcgc
ctgcgcgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctcaagctgctggaagccttctactattccggcaacaagccgggctggatgatcatggaa
gtgctgccagtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtggatgcactgctcgacaacggtcgtcgcggtcgcgccatcaccggttccaac
aagcgtccgctgaagtcactggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgtgtcgactactccggtcgttccgtcatcaccgtcggcccgacc
ctgcgtctgcaccagtgtggtctgccgaagaagatggcgcttgagctgttcaagccgttc
atctacgccaagctgcaggcctccggtcacgccagcaccatcaaggccgccaagaagatg
gtcgagcgtgaagccccggaagtctgggatttcctcgccgacgtcatccgcgagcacccg
gtgctgctgaaccgtgccccgactctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgtacaacgccgac
ttcgatggtgaccagatggccgtccacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtcgtgctgggtctgtactacatgacccgcgagaagatcggtgcc
aagggtgagggcatggccttcgcgaacctgggtgaagtcgagcgcgccttcggcacgcac
agcgctcacctgcacgcgatggtcaaggtccgtctgaccgagacgctcaaggatgaagaa
tccggcgagctgtacgagaagacgtccctgcacgacaccaccatcggtcgcgcactgctg
ttccgcattctgccgaagggcatgccgttcgagctgatcaaccaggtgatgaagaagaaa
gccatctccggtctgatcaacgaggcgtaccgtcgcgtcggtctgaaggacaccgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctcgcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcattccggacgcgaagaaggtcatcatcgacgcggccgaagac
gaagtgaaagagatcgaagaccagttctcctccggtctcgtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccgtgtcgccaaggagatgatggcg
ggtatctcgaaagagaccgtcgtcaactggaagggcgaagtggtcaacggcgaagacggc
aagccgatggagcaggagtcgttcaacagcgtcttcatcatggctgactccggtgctcgt
ggttccgcggcccagattcgtcagctggccggcatgcgtggcctgatggccaagccggat
ggctcgatcatcgagacgccgatcaccgccaacttccgtgaaggtctgaacgtactccag
tacttcatctccacccacggtgcccgtaagggtctggcggatacggcactgaagaccgcc
aactccggttacctgacgcgtcgtctggtcgatgttgcccaggatctggtcatcaccgaa
gcggattgtggcactcaggaaggtctgatcctgcacccggtcatcgaaggcggtgacatc
atcgtcccgctgtctcagcgtgtgctgggtcgtgtcgtggcacaggatgtcgtcgatccg
gtctctgatgaggtcctgatcgcacgcggcaccctgctggatgaagcctggtgtgcacag
ctcgataccatgggcgtcgatgagatcatcgtgcgtaccaccatcggctgtgaaaccgtg
cacggtgtctgctcggcctgttatggccgtgatctggcgcgtggccatcaggtcaacgtc
ggtgaagccatcggtgtcatcgcggcacagtccatcggtgagccgggtacccagctgacc
atgcgtaccttccacatcggtggtgccgcctcgcgtgcttctgccgtggatagcgtccag
gtcaagcacggcggccacgtgcgtctgcacaacatcaagtcggtcgagcgcgcggatggc
aagctgatcgtcgtctcgcgttccagtgcgctggctgtcgctgacgatcacggtcgtgag
cgtgagttctacaagctgccgtatggtgccgagctgtccgtacgtgacggtgacaaggtc
gaatccggtcagtccgtcgccaagtgggatccgcacactcacccgatcgtcgccgaagtg
gcgggtcaggtgcagttcacggacatggaagatggtcagaccatcaaccgtaccaccgac
gagatgacaggcctgtcctccatcgaagtcatcgagagcgcctcacgtccgtccgcggca
cgtgacaagcgcccgatgatcatgctggtggattccagtggcaagcacgtgacactgccg
ggctccaacacgccggtccagtacctgctgccgggcaatgccgtcgtgtccgccgagaat
ggcgcagccgtcggtgtgggtgacgtcatcgcacgtatcccgatggaagcgtccggtaac
aaggacatcaccggtggtctgccgcgcgttgccgacctgttcgaagcacgtcgtccgaag
gaaccggccatcctggccgagatctccggtaccgtgaccttcggcaaggaaaccaagggc
aagcgtcgcctgaccatcacgccggccgaaggtgacccgttcgagctgttgatcccgaaa
tggcgccagatcagcgtcttcgaaggggaaacggtcgagaagggtgaggtcatctccgat
ggcccgagcaatccgcacgatatcctgcgtctgctcggcgtcgcggaaatgaccaagtac
atcaccaccgaagtccaggaggtctatcgcctccagggtgtcggcatcaacgacaagcac
atcgaagtcatcgtgcgtcagatgctgcgcaaggtggagatcaccgattccggcgattcc
agcttcatcaccggcgaccaggtggaatacgcccgtgtcgtcgaagagaacatgcgtctc
gaggccgaaggcaagttcccggccaagttcgaccgcatcctgctcggtatcaccaaggcg
agcctggcgacagaatcgttcatctcggcggcctccttccaggagaccacacgagttctg
accgaagcctctgtcaccggcaagcgcgattatctccgtggtctgaaggagaacgtcgtg
gtgggtcgcctgatcccggcgggtactggcctggcttatcacgatgagcgtcgccgccgt
cgtgatggcctgccgctcgcaccggccccgtcggcacaggacgtcgagcaggagctgggt
gcccagctgaccgctctcgacgcggacgacgacgacctctga
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