Cobetia marina: BFX80_01330
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Entry
BFX80_01330 CDS
T04789
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cmai
Cobetia marina
Pathway
cmai03410
Base excision repair
cmai03430
Mismatch repair
cmai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BFX80_01330
03430 Mismatch repair
BFX80_01330
03440 Homologous recombination
BFX80_01330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmai03400
]
BFX80_01330
DNA repair and recombination proteins [BR:
cmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BFX80_01330
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BFX80_01330
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFX80_01330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
AOM02724
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All DBs
Position
294105..295874
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AA seq
589 aa
AA seq
DB search
MARVIQPRVRDERLYQQGIATGLSELQARVLAGRLTLESCKAPLEALVTPALRHIEHPER
LADGRRAAERIARAVAEGEHIGILTDYDVDGITSHVVMLRTLTELFDVPYDRVHSLIGHR
IHDGYGISLPLVERIMTLSPRPSLIVTADCGSSDEARLALLKEAGIEVVVTDHHALPQEG
PPASAYATVNPTRDDCAYPDATIAGCMVAWLTMSLTRNVLIEQGRLPGDAPKLSPWLSYV
ALGTVADCVSLGGSAINRAVVNLGLTLINRMQEPCWRAMAERLGADSVPFDAETLAFQMG
PRINARSRLDDPYAALHFMLARGDEAAQRALEVLDQDNQSRKAIEAEMVESARALALASL
REGHQVIVVHLEDGHPGVQGIVASRLVQQFGRPTVVLTPAAVPGMLTGSGRSIEGLHLRD
ALQRAHDLAPQCLPRFGGHRGAAGVGLPLAEKDTFTRALQQAAAEQLGERALNPLILSDG
ELAEGQLSLETLDELERLAPFGREFEAPLFEGSFLVESLRPVGADGTHLSLELSLGRTRL
KAIWFRALSPGESPAFGVGAALKCAYKLSRNRWRGRESLQLMLEHAVPA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atcgcgcgggtcatccagcctcgcgtcagagatgagcgcctctaccagcaggggatcgcg
acggggctcagcgaactgcaggcacgagtactggcagggcggttgacgctggagagctgc
aaggcgccgctggaggcgctggtcacgccggcgctccggcatatcgagcatcccgagcgg
ctggcggatggccggcgggcggcagagcgcatcgcgcgtgctgtcgccgagggtgagcat
atcggcatcctcacggactatgacgtggacggcatcacctcgcatgtggtgatgctgcgc
acgctgacggagctgttcgatgtgccctacgaccgggtgcacagtctgatcggtcatcgc
atccacgatggttacggcatcagtctgccgctggtcgagcgcatcatgacattgtcgccg
cgcccgagcctgatcgtcaccgcggattgtggttccagtgatgaggcgcgcctggcgctg
ctcaaggaagcggggatagaggtcgtggtgacggatcaccatgcgctgcctcaggaaggg
ccgccggcttccgcctacgcgaccgtcaatccgacacgtgacgattgtgcctatccggat
gcgaccatcgccggttgcatggtggcctggttgaccatgtcattgacgcgcaatgtgctg
atcgagcaaggcagattgccgggggatgcacccaagttgtcgccatggctgtcatatgtg
gcgctggggacggtggcggactgtgtgtcactggggggcagtgcgatcaatcgtgcggtg
gtcaatctgggtctgacgttgatcaatcgcatgcaggagccctgctggcgagccatggca
gagcggctcggggccgatagcgtgcccttcgatgccgagacgctggccttccagatgggg
ccgcgcatcaatgcccgctcacgactggatgatccttacgccgcactgcatttcatgctg
gcgcgtggagatgaggctgctcagcgcgcgctggaggtgctcgatcaggacaatcagtcg
cgcaaggcgatcgaagccgagatggtggagtcggcgcgcgccttggcgctcgcctcgttg
cgggaagggcatcaggtgatcgtggtgcatctggaagatggacacccgggagtgcagggc
attgtcgcttcacgtctcgtgcagcagttcgggcgtccgaccgtcgtgctgacaccagcc
gcggtgcccggcatgttgaccgggtccgggcgctccatcgaaggattgcatctgcgggat
gcgttgcagcgagcgcatgacctggcaccgcagtgtctgccgcgtttcggtgggcacaga
ggtgcggcaggggtgggcttgcccctggcggagaaggataccttcactcgtgctctgcaa
caggcggccgcggagcaattgggtgaaagggcgctcaaccccttgattctcagtgatggt
gaactggcagaagggcagttgagcctggagaccctggatgaactcgagcgtctggcgccc
ttcgggcgtgagttcgaggcgcctctcttcgagggcagtttcctggtcgagagtctgcga
ccagtaggtgccgatggcacacatctgtcgcttgagctctcgctcgggcgtacacgcctc
aaggcgatctggttccgggcgctgtcgccgggggaatcgccggcattcggcgtgggggcc
gctctgaagtgtgcttacaagctgtcgcgcaatcgctggcgggggagagaatcgctgcag
ctgatgctggagcatgccgtaccagcatga
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