Cobetia marina: BFX80_02220
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Entry
BFX80_02220 CDS
T04789
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cmai
Cobetia marina
Pathway
cmai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BFX80_02220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmai03021
]
BFX80_02220
Transcription machinery [BR:
cmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BFX80_02220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOM00353
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Position
507540..509378
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AA seq
612 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPEQVEDIISMINDMGIKVAEE
APDADTLMMSDSSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIK
IAKRIEEGTREVMSSLAFLPGAVDSILEAYDGTLGEDGGRLSDLFSGFIDPDEGVPGVAE
VEVEEVEEVEEGEESEGEDDDEDDSASEGGPDPELARVRFEQIREQNDLTKAAIEKYGSG
SPEAKAEQERLAELFSPIKLVPKHFERLVGQVRVSVEQVREQEKVILQIFVKRGKVPRKS
FIKAFPGHESDMDWFDGFIGGSKKYADKLEPFRADVLRAQRKIAFEQDMVQLPVSELKEV
NRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPE
ELGERLEMPEDKVRRVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMVSPIDSATGEGLI
EATRGILSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSESLRSFMEE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaatgcgcagcagcagtcgcgtctcaaggagttgatcgcgcgcggcaaggaa
cagggttacctgacctatgccgaggtcaacgatcacctgcccgaggatatcgctgatcca
gaacaggtggaagacatcatcagcatgatcaacgatatgggcatcaaggtcgctgaagaa
gcgcctgatgccgataccttgatgatgtctgattcctccactgacgagtccgccgccgaa
gaagccgtcgctgctctcgccgcggtggaaagcgatgtgggacgcacgaccgacccggtc
cgcatgtacatgcgtgaaatgggtaccgtcgaactcctgacccgtgaaggcgagatcaag
atcgccaagcggatcgaggaaggcacgcgtgaggtcatgtcgtctctggccttcctgccg
ggagcggtcgactccattctcgaagcctacgatggcacgctcggcgaggacggcggacgt
ctgtccgacctgttctccggtttcatcgatccggatgaaggcgtaccgggtgtcgctgaa
gtcgaggtcgaggaagttgaggaagtcgaggaaggcgaggagtctgaaggcgaggacgac
gacgaggacgactccgcttccgagggtggtccggatcctgagcttgcacgcgtgcgcttc
gaacagattcgcgagcagaatgatctgaccaaggccgccatcgagaagtacggttcaggt
tctcctgaggccaaggccgagcaggagcgtcttgccgagctgttctcgccgatcaagctg
gtgcctaagcacttcgagcgcctggtcggtcaggttcgcgtgtccgtcgagcaggtgcgc
gagcaggaaaaggtcatcctgcagatcttcgtcaagcgcggcaaggtgcctcgcaagagc
ttcatcaaggcattcccgggccacgagtccgacatggactggttcgacggcttcatcggc
ggcagcaagaagtacgccgacaagctcgagccgttccgtgccgacgtgctgcgtgcccag
cgcaagatcgccttcgagcaggacatggtccagctgccggtcagcgagctcaaggaagtc
aatcgtcgcctgtcgatcggtgaagccaaggcgcggcgtgccaagaaggaaatggtcgag
gccaacctgcgtctggtcatctccatcgccaagaagtacaccaatcgtggcctgcagttc
ctggatctcatccaggaaggcaacatcggcctgatgaaggccgtggacaagttcgagtac
cgtcgtggttacaagttctcgacctacgccacctggtggatccgtcaggcgatcacgcgc
tccatcgcggatcaggcgcgcaccatccgtattccggtgcacatgatcgagaccatcaac
aagttgaaccgtgtctcgcgtcagatgctgcaggaaatgggtcgcgagccgacgccggaa
gagctgggtgaacgcctcgagatgccggaagacaaggtgcgtcgcgtgctcaagatcgcc
aaggagcccatctccatggagacgccgatcggtgacgacgatgattcgcacctgggtgac
ttcatcgaggacggcaccatggtctcgccgatcgactccgccaccggcgaaggtctgatc
gaagcgacccgcggcatcctgtccggtctgaccgcacgtgaagccaaggtgctgcgcatg
cgtttcggtatcgacatgaacaccgaccacacccttgaggaagtcggcaagcagttcgat
gtcacccgtgagcgtatccgtcagatcgaagcgaaagcgctgcgcaagctgcgtcacccg
tcacgctccgagtcactgcgttccttcatggaagagtga
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