Cobetia marina: BFX80_12735
Help
Entry
BFX80_12735 CDS
T04789
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cmai
Cobetia marina
Pathway
cmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFX80_12735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmai03019
]
BFX80_12735
03009 Ribosome biogenesis [BR:
cmai03009
]
BFX80_12735
Enzymes [BR:
cmai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BFX80_12735
Messenger RNA biogenesis [BR:
cmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFX80_12735
Ribosome biogenesis [BR:
cmai03009
]
Prokaryotic type
rRNA processing factors
BFX80_12735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RecA_C
Motif
Other DBs
NCBI-ProteinID:
AOM01996
LinkDB
All DBs
Position
3105831..3109466
Genome browser
AA seq
1211 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRIEPSLEACFVDFGAD
RHGFLPLKEISREYFSKDPGQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLAG
RFLVLMPNNPRAGGISRRIEGEERAQLKEAMNSLTLPDKMGVIVRTAGIGKSAEELQWDL
DYLAQVWDAVTKAAASRPAPFLIYRESNVIIRAMRDYLRNDIGEVLIDSGDVQEEALSFV
RQVMPSYQQKIKLYEDDVPLFSRFQIESQIETAYQREVKLPSGGAIVIDHTEALVSIDIN
SARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPARNQREVENRVRD
ALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSMALSIMR
LIEEEAMKERSSQIRAILPVPVATYLLNEKRATLFDIERRQGVNVVLLPNPELDTPHYEV
VRLRDDHVDEDGADKSSFELSVETEVGKEPDPNFDKPPARTEAAVKSVSHTTPAPASAPE
VSEPAETDENTSASGNGNGNGNGNGNDNAKNGNDNAKNGNRRRNGNGSNNRSRNDNRNDN
RNDSQSETRNDSRQGSRSDTRNDGRNANRNDNRQTSRNDGRNAVSKSEATAAPATQAPAA
APSGGGLLARLAKGFSRLLGSDDSASATPAKSSEARKALEKARERRESVSEASTDGNARK
DGRNANRGNARNDNRRRNAEGDSRQQDSRQQDSRQQDTRGNDNDGRNDGRNDSQSDNRSE
GRSNNKRRQRNDRGNRRKSSESRQDNAQDIVTNDSKPQAEATEKTSDAQTPAKAPSGNDA
KSDAKQNVAKQNEAKQNDAKQDNAAKRDDKPARREKPSKADKAEQVNSHHARESIKAAEQ
AQQSEQQADDVQQPTRNNPRARSRSHALNPDAVAQQQSLKAMALAGPQAQSAQPADAVLD
DVASTAAPQQPVPAVAEEGAEGVKVAPETVESSEPQAQAVVADSDGDKAAPADTSADVSA
KVETDVAPAVAVAADDATPDEQPSVAETPEAPEISAPSTQALQQDVTTRDGSAEVSDSST
ASATPHQAQRTEQHATQRTEQHAPQQASAHQAQAETLSATTDTDADTSETVSDAEADVAA
TDVKADDSAVQAQVAVETAPEAAVDSQALKDSVMPQETASVAETEACVEADTPIALSTPA
KRRRSQRRQLR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcaacgcgacccagccggaagagctgcgcgtcgcactggtcgacggacaacgc
ctttacgatctcgacatcgagtctggtgcccgcgagcagaagaaagccaacatctaccgc
ggcaagatcacccgcatcgagcccagcctggaagcctgcttcgtcgatttcggcgccgat
cgccacggcttcctgccgctcaaggaaatctcccgcgagtacttcagcaaggacccgggc
caaggccgccccaacatcaaggaagtgctcaaggaaggccaggaagtcatcgtccaggtc
gacaaggaagagcgtggcaacaagggcgccgccctgaccaccttcatcagtctggccggc
cgcttcctcgtgctgatgcccaacaacccgcgtgccggtggcatctcccgccgcatcgag
ggggaagagcgcgcccagctgaaagaggcgatgaacagcctcaccctgccggacaagatg
ggcgtcatcgtacgcaccgccggtatcggcaagagcgcagaagagctccaatgggacctc
gactatctggctcaggtctgggatgccgtcaccaaggctgccgccagccgccctgccccc
ttcctgatctatcgtgaatccaatgtcatcatccgtgccatgcgcgactatctgcgcaat
gacatcggtgaggtgctgatcgattccggtgacgtccaggaagaagccctgtccttcgtc
cgtcaggtcatgccgagctatcagcagaagatcaagctctacgaagacgacgtaccgctg
ttctcgcgcttccagatcgaatcccagatcgagaccgcctatcagcgcgaagtgaagctg
ccttccggtggcgccatcgtcatcgaccacaccgaagctctcgtctccatcgacatcaac
tccgcgcgtgccacgcgtggcagcgatatcgaggaaaccgcgctgcagaccaacctggaa
gcggcggacgagatcgcgcgccagctgcgtctgcgtgacatcggcggcctggtggtgatc
gatttcatcgacatgaccccggcgcgcaatcagcgtgaagtcgagaatcgcgtgcgagac
gcgctcaagatcgaccgcgctcgcgtgcagatcggtcgcatctcacgcttcggcctgatg
gaaatgtcgcgtcagcgcctgcgtccgtcactgggcgagaccagcggcgtggtctgcccg
cgctgtgacggccagggcaccatccgcgacgtgcgctccatggcgctctcgatcatgcgc
ctgatcgaggaagaggccatgaaggagcgcagctcgcagatccgcgccatcctgccggtg
ccggtcgcgacctacctgctcaacgagaagcgcgccacgctgttcgacatcgagcgtcgt
cagggcgtcaatgtcgtgctgctgccgaacccggaactcgacacgccgcactacgaagtc
gtgcgtctgcgtgatgaccatgtcgatgaagacggtgccgacaagtccagcttcgagctg
tccgtcgagaccgaagtcggcaaggagccggatccgaatttcgacaagccaccggcacgc
accgaagcggcggtcaagagcgtgtcccacacgacgcctgcccccgcctccgcaccggaa
gtcagcgagcccgccgagactgacgagaacacctccgcttccggcaacggcaacggcaac
ggcaacggcaacggcaacgacaatgccaagaacggcaacgacaatgccaagaacggcaac
cgtcgtcgcaatggcaatggcagcaataaccgcagccgcaacgacaatcgcaacgacaat
cgcaacgacagccagagcgagactcgcaacgacagtcgtcagggatcgcgcagcgacact
cgtaacgacggccgcaatgccaatcgcaacgacaatcgtcagacctctcgcaatgacggg
cgcaatgcggtgagcaaatccgaggccacggcggccccggccacccaggcaccggcagca
gccccttccggcggcggtctgctggcacgtctggccaagggcttcagccgcctgctgggc
agcgacgacagcgccagcgcgacgccggccaagtccagcgaagcccgcaaggcactggaa
aaggcacgcgaacgtcgcgaaagcgtcagcgaagcctcaaccgacggcaatgcacgcaag
gatggccgcaatgccaaccgcggcaacgcacgcaacgacaatcgtcgccgcaacgccgag
ggcgattcacgccagcaggactcgcgtcagcaggactctcgtcagcaggacacgcgcggc
aacgacaacgatggtcgcaacgatggtcgcaacgacagccagagcgacaaccgctccgag
ggtcgcagcaacaacaagcgtcgtcagcgcaatgaccgtggcaatcgtcgcaagtccagc
gagtcgcgtcaggacaacgctcaggacatcgtgaccaacgacagcaagccgcaggcagaa
gcgacggagaagacatccgacgcacagacacctgccaaggcgccgtccggcaatgatgcc
aagagcgatgccaagcagaacgttgccaagcagaacgaggccaagcagaacgatgccaag
caggacaatgctgccaagcgtgatgacaagccggcgcgccgtgagaagccttccaaggcg
gacaaggcagagcaggtcaacagccatcatgctcgcgagtccatcaaggcggcagaacag
gcccagcagagcgagcagcaggcagacgatgtccagcagccgacgcgcaacaatccgcgc
gctcgtagccgcagccatgcactcaatcccgatgccgtcgctcagcagcagtccctgaag
gccatggcactggccggcccgcaggcgcagagcgctcagccagccgacgccgtgctcgat
gacgtcgcctcgaccgcagcaccgcagcaaccggttcccgccgttgccgaggaaggtgcc
gaaggcgtgaaggtcgcgcctgagacggtcgagagcagtgaaccgcaagcgcaagctgtc
gtcgctgacagcgacggcgacaaggcagcgcctgccgacaccagtgccgacgtcagcgcc
aaggtggagacggacgtggcgccggccgtggcagtggccgctgacgacgccacgcctgat
gagcagccgtcggtcgccgagacgccagaggcgccggaaatcagtgcgcccagcacgcaa
gccctgcaacaggacgtgacgacacgggatggctctgccgaggtcagcgactccagcacc
gcgtctgccacgccccatcaggctcagcgcactgaacagcacgccacccagcgtactgaa
cagcatgcaccgcagcaggccagcgctcatcaagcgcaggccgagacgctgagcgcaacg
accgataccgatgccgacacctctgaaaccgtgtccgatgccgaggccgatgtggcagca
acggacgtcaaggcggatgacagcgcggtacaggcgcaggtcgcggtggagaccgcaccg
gaagcggccgtcgacagccaggcgctgaaggacagcgtgatgccgcaggagacggcgtcc
gtggccgagaccgaagcttgcgtggaagcagacacccccatcgcactgagcacgccagcg
aagcggcgacgcagccagaggcgacagctcaggtag
DBGET
integrated database retrieval system
