Cobetia marina: BFX80_12925
Help
Entry
BFX80_12925 CDS
T04789
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cmai
Cobetia marina
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmai03032
]
BFX80_12925
03400 DNA repair and recombination proteins [BR:
cmai03400
]
BFX80_12925
Enzymes [BR:
cmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BFX80_12925
DNA replication proteins [BR:
cmai03032
]
Prokaryotic type
DNA Topoisomerases
BFX80_12925
DNA repair and recombination proteins [BR:
cmai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BFX80_12925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CEP104_ZnF
Motif
Other DBs
NCBI-ProteinID:
AOM02029
LinkDB
All DBs
Position
complement(3149061..3151703)
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTSGSGKQATDPKERARQAAETR
KMSPEAKAAHKEKKAKTQLIRRMGVDPENGWEAHYEILPGKEKVVSELTRLAEKADTIYL
ATDLDREGEAIAWHLRETIGGDDTRYKRVVFNEITKKAITAAFDEPGDLKMDRVHAQQAR
RYLDRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHAELAA
TSGEAIRFELARQDGKAFRPTSEKETLDRIAALRTARLAISNREDKPTRSKPNAPFITST
LQQAASSRLGFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVATARDFIAEEFGDNYL
PQAANVYSSKEGAQEAHEAIRPSEVARRATDLTGMERDAERLYELIWRQFVACQMVPAEY
LSSTLTIEVDGYELRAKGRVLKFDGYTRVMKPAGKKEEDQSLPDLAIGEVLELVELDPQQ
HFTKPTARYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVALENRRFYAEKLGDIVTD
RLSESFKDLMDFGFTARMEDYLDEVANGQRNWRELLDAFYAEFKAELDHAQSEEGMRPNQ
PVPTDIACPTCGREMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGDEAVAADADENA
ETDALRAKRRCPICATAMDSYLIDEQRKLHVCGNSPDCVGHEVEQGQFRIKGYDGPVIEC
DKCGADMQLKTGRFGKYFGCTNEDCKNTRKLLKSGEVAPPKMDPIPMPELACVKVEDHYV
LRDGASGLFLAASQFPKNRETRPPLVSELKAHADELPEKYHFILKAPEKDPDGRPTQIRF
SRKAKEQFVMTDEDGKATGWKATFDNGRWVVEDKRMGAKS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtgatcgtcgagtcgcctgccaaggccaagaccatcaacaagtat
ctcggcaacgacttcgtggtgaagtcgagtgtcgggcatatccgcgatctgccgaccagc
ggtagcggcaagcaggccaccgatcccaaggagcgtgcccgtcaggcagccgagacgcgc
aagatgtcgccggaagccaaggcggctcacaaggaaaagaaggccaagacgcagctcatc
cgtcgcatgggggtagacccggagaacggctgggaggcgcattacgagatcctgcccggc
aaggaaaaggtcgtctccgagctgacgcgcctggccgagaaggccgacaccatctatctc
gcgacggatctggaccgcgaaggtgaggcgattgcctggcacctgcgcgagaccatcggt
ggcgacgatacccgctacaagcgcgtggtattcaacgagatcaccaagaaggcgatcacg
gcggccttcgatgagccgggcgatctgaagatggaccgcgtgcatgctcagcaggcgcgt
cgctatctggatcgtgtcgtcggtttcatggtctcgccgctgctgtgggccaaggtggct
cgtgggctgtcggccggtcgagtgcagtcggttgccgtgcgcttgatcgtcgagcgtgag
cgtgagatccgtgccttcattccggaagaattctgggatgtgcacgcagagcttgccgcg
accagcggcgaggcgatccgtttcgagctggcgcgtcaggatggcaaggccttccgtccg
accagcgagaaggaaacgctggatcgcatcgcggcgctgcgtaccgctcggctcgcgatt
tccaatcgcgaagacaagccgacccgctccaagccgaatgcccccttcatcacctcgacc
ctgcagcaggcggccagcagtcgtctcggcttctcggtcaagaagaccatgatgatggcg
cagcgcctctacgaggccggttacatcacttacatgcgtaccgactcgaccaatctgtcg
gcggacgcggtggccaccgcgcgggacttcatcgctgaggaattcggcgacaactatctg
ccgcaggccgccaacgtctactccagcaaggaaggcgctcaggaagctcacgaagcgatc
cgtccctccgaggtggcgcgtcgcgcgacggacctcaccggcatggagcgtgacgcggag
cgtctgtatgagctgatctggcgtcagttcgtcgcctgccagatggtgccggcggagtat
ctgtcctcgaccctgaccatcgaggtcgatggctacgagctgcgcgccaagggccgggtg
ctcaagtttgacggttatacccgcgtgatgaagccggcgggcaagaaggaagaggaccag
tcactgccggacctggccatcggcgaggtgctggagctggtcgagctggacccgcagcag
cacttcaccaagccgacggcgcgttacaccgaagccagtctggtcaaggagctggagaag
cgcggcatcggccgtccttcgacctatgcggcgatcatctcgaccattcaggatcgtggt
tacgtggcgctggaaaatcggcgtttctacgccgagaagctgggtgacatcgtcactgat
cgtctcagtgaatccttcaaggacctgatggacttcggcttcaccgcgcgcatggaagac
tacctcgatgaggtggccaacggtcagcgcaactggcgtgaactgctggatgccttctac
gccgagttcaaggccgagctggatcacgcccagtcagaagagggcatgcgcccgaatcag
ccggtgccgaccgatatcgcctgcccgacctgtggtcgcgagatgcagatccgtaccgcc
tccaccggcgtcttcctggggtgctccggttacaaccttccgcccaaggagcgctgcaag
accaccatcgacctgttgccgggggatgaggcggtcgccgctgacgcggatgagaatgcc
gagaccgatgcactgcgtgccaagcgccgttgtccgatctgcgccacggccatggacagc
tatctgatcgacgagcagcgcaagctgcacgtctgcggcaacagcccggattgcgtggga
catgaagtcgagcagggtcagttccgcatcaagggctacgatgggccggtgatcgagtgc
gacaagtgcggtgccgacatgcagctcaagaccgggcgtttcggcaagtacttcggctgc
accaacgaggattgcaagaacacccgcaagctgctcaagtccggggaggtcgcgccgccg
aagatggacccgatccccatgccggaacttgcctgcgtgaaggtcgaggatcactacgtg
ctgcgtgatggcgccagtggcctgttccttgccgccagtcagttccccaagaatcgcgag
acgcgtccgccgctggtcagcgagctcaaggcgcatgccgacgagctgccggagaagtat
cacttcatcctcaaggcgccggagaaagaccccgatggccgcccgacgcagattcgtttc
tcgcgcaaggccaaggagcagttcgtgatgacggacgaagatggcaaggcgacggggtgg
aaggcgaccttcgacaacggccgttgggtcgtcgaggacaagcgcatgggagccaagagc
tga
DBGET
integrated database retrieval system
