Cobetia marina: BFX80_14205
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Entry
BFX80_14205 CDS
T04789
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cmai
Cobetia marina
Pathway
cmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFX80_14205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmai03019
]
BFX80_14205
Enzymes [BR:
cmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFX80_14205
Messenger RNA biogenesis [BR:
cmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFX80_14205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOM02220
LinkDB
All DBs
Position
complement(3440184..3441917)
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AA seq
577 aa
AA seq
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MTETTANSIPAFAALGLSAPVLKAIAEMGYSTPSPVQAGAIPAVLEGRDVMAAARTGTGK
TAGFALPLVERLSNGAPAGARKIKALIVTPTRELAAQIDENVTAYSRHLKLRNAVVFGGV
KINPQISRLSSGVEILTATPGRLLDLHSQKAIDFSDLETLVLDEADRMLDMGFIHDIRRL
LKLLPTKRQTLLFSATFSDEIRGMANKLLNDPVAVEASPRNTTAEKVEQHIHTVEKSHKP
SLLKHLILKENWHQVLVFTRTKHGANRLATKLEKSGISAAAIHGNKSQNARTKALAGFKN
GEVRVLVATDIAARGLDIEQLPQVVNYELPNVPEDYVHRIGRTGRAGASGRAISLVSSDE
RKELGGIERLLKGKLKRVEVEGFVPEVDVEPEREPRQPRGGQRSGGQRTGGQRTGGQRPG
GKPAGEGRGNGGQRSDGQRNGGQRTGGARSDGQRTGGKPAGEGRGNSGQRSDGQRTGGAR
SGGQRTGGARSESQRTGGQRTGGQRPQGGGANHDDDNRGNRAPAPREVDGNRVAPRPEVN
GNRAPEAPSSEERPRRRSRGGRNRSSGGNGGGGRSNG
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgactgagactactgccaactccatcccggcttttgccgccctggggctgtccgctcct
gttctgaaagcgattgccgagatgggctattccacgccgtccccggtgcaggcgggtgcg
attcctgccgtgctggaaggtcgtgacgtgatggctgccgcgcgcaccggtaccggcaag
actgccggtttcgccttgccgctggtcgagcgcctctcaaacggcgcccctgcaggcgcc
cgcaagatcaaggccctgatcgtcacgccgacgcgtgaactggccgcgcagatcgacgaa
aacgtcacggcctactcccgtcacctgaagctgcgcaatgccgtggtgttcggtggcgtg
aagatcaatccgcagatcagccgcctgtcttccggcgtcgagatcctgaccgccacaccg
ggtcgcctgctggacctgcactcccagaaggccatcgatttctcggatctcgagacgctg
gtgctggacgaagcggaccgcatgctggacatgggcttcatccacgacattcgccgcctg
ctcaagctgctgccgaccaagcgtcagacgctactgttctccgcgaccttctcggacgag
attcgcggcatggccaacaagctgctcaatgatccggtcgccgtggaagccagcccgcgc
aacaccacggccgagaaggtcgagcagcatatccataccgtggagaagagccacaagcct
tcgctgctcaagcatctgatcctcaaggaaaactggcatcaggtgctggtcttcacgcgt
accaagcatggggccaaccgtctggcgaccaagctcgagaagtccggcatcagcgccgcg
gcgattcatggcaacaagagccagaatgcccgtaccaaggcattggccggtttcaagaac
ggcgaagtgcgcgtgctggttgccaccgatatcgcggcacgtggcctggatatcgagcag
ctgccgcaggtcgtgaactacgaactgcccaatgtcccggaagactacgttcaccggatc
ggacgtaccggtcgcgccggtgccagcgggcgtgccatctcgctggtttccagcgatgag
cgcaaggagctcggcggtatcgaacgtctgctcaagggcaagctcaagcgtgtcgaagtg
gaaggtttcgtgccggaagtcgacgtcgagccggaacgtgagccgcgtcagccgcgtggc
ggccagcgctctggcggccagcgcactggcggccagcgcactggcggccagcgccctggc
ggcaagcctgccggtgaaggtcgtggcaatggtggccagcgctctgacggccaacgtaat
ggcggccagcgcactggcggcgcgcgctcggatggtcagcgcactggtggcaagcctgcc
ggtgaaggccgtggcaatagcggtcagcgctctgacggccagcgcactggcggcgcgcgc
tcgggcggtcagcgcactggcggcgctcgttcggaaagtcagcgcactggcggtcagcgt
actggcggccagcgcccgcaaggtggcggtgccaatcacgacgacgacaatcgcggcaat
cgtgctcccgcaccgcgtgaggtggatggcaaccgcgtcgcgccgcgcccggaagtgaac
ggcaatcgcgcgccggaggcaccgtccagtgaagagcgtccgcgtcgtcgttcgcgtggt
ggccgcaatcgctccagcggtggcaatggcggtggtggccgctccaacggctga
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