Cobetia marina: BFX80_14785
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Entry
BFX80_14785 CDS
T04789
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmai
Cobetia marina
Pathway
cmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFX80_14785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmai03019
]
BFX80_14785
03009 Ribosome biogenesis [BR:
cmai03009
]
BFX80_14785
Enzymes [BR:
cmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFX80_14785
Messenger RNA biogenesis [BR:
cmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFX80_14785
Ribosome biogenesis [BR:
cmai03009
]
Prokaryotic type
rRNA helicases
BFX80_14785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOM02303
LinkDB
All DBs
Position
complement(3598766..3600463)
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AA seq
565 aa
AA seq
DB search
MTTTSVVDRFSDLALLPAVLTSLEKLGYETPSPIQAQTIPSLLDGRDMIGQAQTGTGKTA
AFALPLLTRLDLDRREPQVLVLAPTRELAQQVAVNFTRYGQFMRGLEVATLCGGQDYREQ
MRSLKSGAQIVVGTPGRVIDHLDRKSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADTP
KEAQRVFFSATLPTEIERIVNRYLVDPIKVAIKSESKTASTIEQMMVRVEGGAKLEALSR
LLEVETVDAAIVFVRTRAACTTVVEQLMARGISAAALSGDLDQSLRERTVTRLKRGKVDV
LVATDVAARGLDVARITHVFNYDLPGDSESFVHRTGRTGRAGREGRAITFVSGREMRKVR
WMEQALGQRITERQLPSEEEIRAHRDAAFRARVVEALGSSSNGHRALVQSLIEEGHDPVE
LAAVFVKMARAEETPIQSLPKPGARRNERPERGERPERGERRSSAPVAREGMKLYRVAVG
HRDGVKPGQLVGALANEGGIEGSRIGRIDIRNTHSVVELPSGLPTSIVSKMARARVAGRP
LELAEDGAGARPQRREGGNDDRRRA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacttccgtcgtcgatcgcttcagcgatcttgccctgctgcctgccgtcctg
acctctctcgagaagctgggctacgaaacaccgtcccccatccaggcccagaccatcccg
agcctgctcgatggccgtgacatgatcggtcaggcccagaccggtaccggcaagactgcg
gccttcgctctgccgctgctgacccgtctggacctcgaccgccgcgagccgcaggttctc
gtgctggctccgacccgtgagctggctcagcaggtcgctgtcaacttcactcgttacggc
cagttcatgcgtggcctggaagttgccaccctgtgtggtggtcaggactaccgcgagcag
atgcgcagcctgaagagcggcgcccagatcgtcgtcggtactccgggtcgtgtcatcgac
cacctggatcgcaagagcctgaagctcgacggcctgtccgccctggtgctggacgaagcc
gacgagatgctgcgcatgggcttcatcgatgacgtcaagcgcgtcgtcgccgataccccg
aaggaagcacagcgcgtgttcttctccgcgacgcttccgaccgagatcgagcgtatcgtc
aaccgctacctggttgacccgatcaaggtggccatcaagtctgaatccaagaccgcttcc
accatcgagcagatgatggtgcgtgtcgaaggcggcgccaagctggaagcgctgtctcgc
ctgctggaagtcgagaccgtcgatgccgccatcgtcttcgtgcggactcgtgccgcctgt
accaccgtcgtcgagcagctgatggctcgcggtatctccgctgcggcactgtccggtgat
ctggaccagtccctgcgtgagcgtaccgtgacgcgtctgaagcgtggcaaggtcgacgtg
ctggtcgcgaccgacgtcgccgctcgtggtctggacgtggcgcgtatcacccacgtcttc
aactacgacctgccgggtgacagcgaatccttcgtccaccgtactggccgtaccggtcgt
gccggtcgtgaaggtcgcgccatcaccttcgtcagcggtcgcgagatgcgcaaggttcgc
tggatggagcaggctctgggccagcgcatcaccgaacgccagctgccgagcgaagaagag
atccgtgctcaccgtgacgcggccttccgtgctcgcgtcgtcgaagccctgggcagcagc
tccaatggccaccgcgccctggtgcagagcctgatcgaggaaggtcatgatccggtcgag
ctggccgcggtcttcgtcaagatggctcgcgccgaagagacgccgatccagtccctgccg
aagccgggtgcgcgtcgcaacgagcgtcctgagcgcggcgagcgtccggagcgtggtgag
cgtcgcagctctgcgccggtcgcacgtgaaggcatgaagctctaccgtgtggccgtcggc
catcgtgacggcgtcaagccgggtcagctggttggcgctctcgccaacgaaggtggcatc
gaaggttcgcgcatcggtcgcatcgacatccgcaacacgcacagtgtcgtggaactgccg
agcggtctgccgaccagcatcgtgtccaagatggcgcgtgctcgcgtcgctggccgtccg
ctggaattggcagaagacggtgcgggcgctcgtccgcagcgccgtgaaggtggcaacgac
gaccgtcgtcgcgcctga
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