Corynebacterium macclintockiae: ACMX9P_01100
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Entry
ACMX9P_01100 CDS
T11427
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmal Corynebacterium macclintockiae
Pathway
cmal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACMX9P_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmal03021
]
ACMX9P_01100
03400 DNA repair and recombination proteins [BR:
cmal03400
]
ACMX9P_01100
Enzymes [BR:
cmal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACMX9P_01100
Transcription machinery [BR:
cmal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACMX9P_01100
DNA repair and recombination proteins [BR:
cmal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACMX9P_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DDE_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
XXN07468
LinkDB
All DBs
Position
244548..248519
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMMLEKKEVEQERDAELADRAKVLEED
LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI
YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAEVLREVIRDGKGQKKLRALKRLKVVA
AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR
PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ
GAYTPATDEAPAQGVYSSLAEAIMAYDRGVLGLQAPIRVRINHLRPTAEIEAERFPDGWQ
RGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQATVINDLAAKYPMITVAQTVDKLK
DAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVDL
WKEATDFVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPIK
TSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQGA
MMSVAVPVLDGEGKPTGNYTPADFVETSVLGRYLASDATDSAGTVLIEEGKVIDEAGLQK
LIEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQLT
MRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPDDG
SDDVVYEKLSKRQGLATLGTGGVERPIRDGDHVKMGQQLLKGAADPHEVLRVLGRRGVQQ
HLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAASKE
AVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV
IIGKLIPAGTGISRYRNITVEPTEEARAAAYSLPSSFGDGFYADDNYGEFTGAAVPLDDM
DLM
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaactttttcgatgaacttcgcatcggactagcgaccgctgacgacatc
cgtcgatggtcccgtggcgaggtcaagaagcctgagaccattaactaccgaaccctgaag
ccggagaaggatggcctgttctgcgagcgcattttcggccccacccgcgactgggagtgt
ggctgtggcaagtacaagcgtgtgcgctacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgccgtgagcgcatgggacacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgtgccctctcgcctgggctacctactggatctg
gctccgaaggatctggaaaagatcatctacttcgccgccaacatcatcacctccgtcgac
gaggaaggtcgccacaacgaccagtccaccctcgaggcagagatgatgctggagaagaag
gaggtcgagcaggagcgcgacgctgagctggccgaccgcgccaaggtgcttgaagaggac
ctggctgagctcgaggccgctggtgccaagaacgatgccaagaagaaggtgcagaacgcg
gctgaccgcgagatgcgccacatccgcgagcgcgccgagcgcgaaatcgatcgcctggac
gagatctggaacaccttcgtcaagctggcaccgaagcagatgattgtggatgagaacatc
tacaacgagctggtcgaccgctacgaggactacttcaccggcggcatgggtgcagaggcc
atccagacccttatccgcagcttcgacctcgaggctgaggctgaggtgctgcgcgaggtc
atccgcgacggcaagggacagaagaagctgcgtgctctgaagcgcctgaaggtcgtcgca
gcgttcctgcgctccggcaacgacccggccggcatggtgctggactgcattccggtgatc
ccgccggagctgcgccccatggtgcagctggacggtggccgcttcgcgacctccgacctg
aatgacctgtaccgtcgcgtgattaaccgcaacaaccgcctgaagcgcatgctggacctc
ggcgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaatccgtcgacgcg
ctgttcgacaacggccgtcgtggccgtccggtcaccggcccgggcaaccgtccgctgaag
tccctgtctgacctgctgaagggcaagcagggccgcttccgccagaacctgctgggtaag
cgcgtggactactccggtcgttccgtgattatcgttggtccgcagctgaagctgcaccag
tgtggtctgccgaagctgatggccctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgagaagtcctacgcgcagaacatcaagtccgctaagcgcatggtggagcgccagcgc
ccagaggtgtgggacgtgctggaagaggccatcgccgagcacccggtgatgctgaaccgt
gcaccgacgctgcaccgcctgggtatccaggcctttgagccgatcctggtcgagggtaag
gctatccagctgcacccgctggcctgtgaggccttcaacgcggacttcgacggtgaccag
atggcagttcacctgccgctgagcgctgaggcacaggcagaggctcgcatcctgatgctg
gcttccaacaacattctgtccccggcctccggtaagccactggctatgccgcgtctggac
atggtgaccggcctgtactacctgaccctgctgaagaagccggaagagttcggtggtcag
ggtgcctacaccccggctaccgacgaggctcccgcacagggcgtgtactcctccctggcc
gaggccatcatggcttacgaccgtggcgtgctgggcctgcaggctccgatccgcgtgcgc
atcaaccacctgcgcccgaccgcggagatcgaggccgagcggttcccggatggttggcag
cgaggccagacctggctggcggagaccaccctgggtcgcgtgctgttcaacgagctgctg
ccgtggaactacccatacgtagagggcgtcatggcgaagaagccacaggctaccgtcatt
aacgacctcgcggcgaagtacccgatgatcaccgtggcgcagacggtggacaagctgaag
gatgccggcttctactgggctacccgctccggcgtgaccatcaccatgcacgacgtgctg
gtgctgccgaacaagcaggaagttctggataactacgaggccaaggctcgagttatcgag
aagaagatggcacgcggcaagatcaacgaggccgagcgctaccagtccctggttgacctg
tggaaggaagctaccgacttcgtgggtcagtccgtcgaggatctgtacccggacgacaac
ccgattccgatgatcgtgaagtcgggtgctgccggtaacatgcgtcagatctggaccctg
gccggcatgaagggtatggttacgaactcccgcggtgagtacatcacccgcccgattaag
acctccttccgtgaaggcctgtccgtgctggagtacttcaacaactcccacggttcccgt
aagggcctggccgatacggctctgcgtaccgctgactcgggttacctgacccggcgtctg
gtcgacgtggcgcaggacgtcatcgtgcgcgaggacgactgtggcaccaagcagggtgcc
atgatgtccgtcgccgttccggttctggatggcgagggcaagccgaccggtaactacact
ccggcagacttcgtcgaaacgtctgttctgggtcgttacctagctagtgacgccaccgac
tccgcaggcaccgtcctcatcgaagagggcaaggttatcgatgaagccggtttgcagaag
ctcatcgaagctggcgtggaggaagtcaaggtccgctccgtgatgacctgtgctaccaac
accggcgtttgctccacctgctacggccgttccatggcgaccggcaagaaggtggagatc
ggcgaggccgttggtatcgtcgccgctcagtccattggtgagccgggtacccagctgacc
atgcgtacgttccacctgggtggtgtcggtggcgacattaccggtggtctgccgcgtgtt
caggagctgttcgaggctcgtgttccgaaggcgaagtccccgatcgcgtcggtggacggc
aaggtgcgcatcgaggacgacgacaacttcttcacccttaccatcgagccggatgacggt
tccgatgatgtggtgtacgagaagctgtccaagcgccagggcctggcaacgctgggcacc
ggtggcgtggagcgtccgatccgcgatggcgaccacgtgaagatgggacagcagctgctg
aagggtgccgcggatccgcacgaggttctgcgcgtgctcggccgccgtggcgtgcagcag
cacctgatcaacgaggtccagaaggtctaccgcgatcagggtgtggccatccacgacaag
cacatcgagatcatcgtgcgccagatgctgcgccgcgtgaccgtcatcgactccggctcg
accgagttcctgccgggctccctggtggatcacgccgacgcggtggctgcgtccaaggag
gccgtcaagaccggcggccgtccggtggaggttcgcgccgagatcatgggtatcacgaag
gcctccctggctaccgagtcctggctgtccgccgcctcgttccaggagaccacccgtgtg
ctcacggacgctgccatcaacaagcgttccgacaagctgatcggtctgaaggagaacgtg
atcatcggtaagctgatcccggctggtacgggtatctcccgctaccgcaacatcaccgtg
gagccgaccgaggaggcccgtgcagcggcgtactccctgccgtcctccttcggggatggc
ttctacgccgacgacaactacggcgagttcaccggcgctgccgtgccgctggacgacatg
gatctgatgtaa
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