Cetorhinus maximus (basking shark): 144671737
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Entry
144671737 CDS
T12026
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmam Cetorhinus maximus (basking shark)
Pathway
cmam03020
RNA polymerase
cmam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
144671737 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
144671737 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmam03021
]
144671737 (polr2a)
03400 DNA repair and recombination proteins [BR:
cmam03400
]
144671737 (polr2a)
Enzymes [BR:
cmam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
144671737 (polr2a)
Transcription machinery [BR:
cmam03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
144671737 (polr2a)
DNA repair and recombination proteins [BR:
cmam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
144671737 (polr2a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
144671737
NCBI-ProteinID:
XP_078389871
LinkDB
All DBs
Position
34:1119527..1166205
Genome browser
AA seq
1955 aa
AA seq
DB search
MQGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKTMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQEGEEDLSKEKGHG
GCGRYQPRIRRVGLELYAEWKHVNEDSQEKKILLNPERVYEIFKRITDEECVILGMDPKY
AKPEWMILTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNNQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIVIFNRQPTLHKMSMMGHKVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFMDRGEVMNLLMHLSTWDGKVPQPSILKPRPLWTGKQIFTLVIPGHINC
IRTHSTHPDEEDNGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHITFLEMGH
DITRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVIQLRYGEDGLAGESVE
FQNLASVKPSHKNFEKKFKLEYTNERSLRRTLQEDIVKEILSNAAIQNELEVEFEKMKDD
REVLRAVFPTGDSKVVLPCNLLRMIWNAQKIFHINTRTVTDLHPIRVIEGVKELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSGEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
ASAHGEMDPMKGVSENIMLGQLAPAGTGSFDLLLDAEKCKYGMEIPTNIGGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGVMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY
TPTSPNYSPTSPSYSPTSPSYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQS
PTYTPSSPSYSPSSPSYSPTSPKYSPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYS
PTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP
KGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacctccttccggggacagcgcatgcccactgcgcactatcaaaagggttcag
tttggcatcctaagtccagatgagatgaaacggatgtctgtgactgaaggaggaatcaag
tactccgagaccaccgagggaggccggcccaagctgggtgggctgatggaccctcgccaa
ggtgttattgaaagaactggaagatgccagacctgtgcaggtaacatgaccgaatgcccg
ggtcactttggacacatcgagttggcaaagccagtttttcatgttggttttcttacgaag
acaatgaaagttctccggtgcgtctgtttcttctgttccaagcttctggtggattctaat
aatcccaaaatcaaagacatcttgatcaagtcgaaagggcagccacggaaacgcttgact
cacgtgtacgacctgtgcaaagggaagaacatctgtgagggcggagaggagatggacaac
aagtttggagtggagcagcaagagggcgaggaagacctcagcaaggagaagggtcacgga
ggctgtggccgataccagccccgcattcggagggtggggctggagctgtatgctgagtgg
aaacacgtgaacgaagactcgcaggaaaagaagatcctgctgaacccggagcgggtgtac
gagatcttcaaacgcatcacggacgaggagtgtgtgatcctgggcatggaccccaagtac
gcgaagccagagtggatgattctaactgtgcttccagtgccgccactctcagtgcgtcca
gctgtcgtcatgcagggctctgcacggaaccaggatgacttgacccacaaactggccgac
attgtcaaaatcaacaaccagctgcggaggaacgagcagaatggggcagcggctcatgtc
atcgctgaggatgttaaactcctacagttccatgtagccacaatggtcgacaatgaactg
cccggacttcccagggcaatgcaaaagtcgggccggccgctgaagtccctcaagcagagg
ctaaaggggaaggaagggcgtgtccgtggaaacctgatgggcaagcgtgtggatttctca
gcacgtacggtcatcacacccgaccccaacctctccatcgatcaggtcggagtgccgcga
tcgatcgctgccaacatgaccttcccggagatcgtcactccattcaacattgacagactg
caggagttggtgaggcgaggcaacaaccagtatccaggcgccaaatatatcatccgagac
aatggggatcgaattgacctgcgtttccatcccaagcccagcgatctgcatcttcaaatc
ggataccgggtggagaggcacatgtgcgatggcgacattgtcatcttcaacagacagccc
acgctacacaaaatgtccatgatggggcacaaagtgcggatcctgccctggtcgaccttc
cgactgaatctcagtgtgacgactccgtacaatgcagattttgacggtgacgagatgaat
cttcacttgcctcagtccctggagacgcgagcagagatccaagagctggccatggtaccc
aggatgattgtcacccctcagtccaacagacctgtcatggggattgtgcaggacacattg
acagccgtgcggaagttcacaaagcgagatgtcttcatggaccggggtgaagtcatgaac
ctgttgatgcatctctcgacctgggatgggaaggttccccaaccttccatcctgaaacct
cggccgctctggactggcaagcagatcttcactctggtcatcccaggccacattaactgc
atccggactcacagcacccaccccgacgaagaggacaacggcccttataaacacatctca
ccgggggacacaaaggtgattgtggagaatggagagctgattatgggcatcctttgcaag
aagtcgctgggtacctcggctgggtctctggtacatatcaccttcctggagatgggccat
gacatcacaaggctcttctacagcaacatccagactgtcatcaacaactggttattgatt
gaaggtcacacaattggtattggagactccatcgctgatgccaaaacctaccaggacatt
cagaataccatcaaaaaggccaagcaagatgtgatagaggttattgaaaaagctcacaac
aacgagttggagcccactcccggtaacaccctgcgtcagacctttgagaaccaggtcaac
cgaatcctgaatgatgcccgtgacaaaactggttcatccgcacagaaatccctatctgaa
tacaacaacttcaaatccatggtggtggctggctccaagggatcaaagattaacatctca
caggttattgctgtggtcgggcaacaaaacgtggagggaaagcgaatcccttttggcttc
aagcaccgcacgctgccgcacttcatcaaggatgattacggtcccgagagcagaggtttt
gtggagaactcgtaccttgccggcctgactcccactgagttcttcttccatgccatggga
ggcagagagggtctgattgatactgccgtaaagactgctgaaactggttatatccagaga
cgtttgatcaagtctatggagtcggtaatggtgaaatatgatgcaacagttcgaaactcc
attaaccaagtgattcagctgcgttatggagaagatggcctggcgggggagagtgtcgaa
ttccaaaacctcgcatcggtgaaaccatcccacaaaaacttcgagaaaaaattcaaactg
gagtacacgaacgaacgaagcttacgcaggaccttgcaggaagacattgtgaaggaaatc
ctcagcaatgctgccattcagaacgagctggaggtggagtttgagaagatgaaggatgat
cgagaggtccttagggctgtgttccccactggagacagcaaggtggtactgccctgtaac
ctgctccgcatgatttggaatgctcagaaaatcttccacatcaacacacggacagtgact
gatcttcaccctattcgtgtaatcgaaggtgtgaaggagctgagtaagaaactgatcatc
gtgaacggtgacgacccgctgagccggcaggcacaggagaacgccacactgctcttcaac
atccacctgcggtccaccctgtgcagccgccggatgactgaggaattccgtctcagcgga
gaggcctttgagtggctgctgggtgagatcgaagccaagttcaaccagtcgatagcacac
cctggggaaatggtgggtgctttggctgcccaatcactgggagagcctgccacacagatg
accctgaacacctttcactacgccggtgtgtcagccaagaacgtcaccctgggtgtccct
cgtctgaaggagctgatcaacatctccaagaagcccaagactccctcgcttactgtcttc
ctgctgggccagtctgccagggatgcagaacgtgccaaggacatcctctgccgactggag
cacaccacactgaggaaggtgacggccaacactgccatctattacgaccctgacccccag
aacacggtggtgtctgaggaccaggagtgggtgaatgtctactatgaaatgccagacttc
gacgtgacgcggatctctccctggctcttgcgcatagagcttgaccgcaaacacatgact
gaccggaaactgaccatggagcagattgccgagaaaatcaatgctggttttggtgatgat
ttgaactgcatctttaacgatgacaacgctgagaaactggtcctgagaatccgcatcatg
aacagtgatgagaataaattccaggagcaagaggaggaggtggtggacaagatggacgat
gacgtattccttcggtgcattgagtcaaacatgctgacagacatgacgttgcagggaatc
gagcagatcagtaaggtgtacatgcacctccctcagacagacaacaagaagaagataatt
atcacagaggatggggaatttaaagccctccaggagtggattctggagacggacggagtc
agtctgatgagggtgctgagcgagaaggatgtggatccagtccgcaccacgtccaacgac
attgtggagatcttcacggttcttggcattgaagcagtgcggaaagccttggagcgggag
ctgtatcacgtcatctccttcgatggctcctacgtcaactaccgccacttgtcgctgctg
tgtgacaccatgacctgccgaggacacttgatggccatcacccgtcatggggtgaacagg
caggacactggcccactcatgaagtgttcctttgaagaaacggtggatgttttaatggag
gcttcagcacacggtgaaatggacccgatgaaaggtgtgtctgagaacatcatgctgggg
cagctagcgccagcgggaacggggtcctttgacctgctgctcgacgctgagaagtgcaag
tacggcatggagatcccaaccaacatcggaggactcggggtcggaggaccgaccggaatg
ttcttcggctctgcccccagcccaatgggtgggatgtctccagctatgactccatggaac
cagggtgcaactcctgcctatggagcctggtcacccagtgtgggcagtggaatgacccca
ggtgctgctggcttctctcctagtgctgcgtctgacgctagtggcttcagtcctggctac
tctcccgcttggtcgccaacccctggctctcctggatctcctggcccatccagtccctat
attccatctccaggtggagtgatgtctcccagttattcaccaacctctcctgcctatgag
ccgaggtctcctggtggttacacaccccagagtcccagctactccccaacgtctccatcc
tacagccccacctcgccatcctactcccccaccagccccaactacagccctacctccccc
agctactcccccaccagccccagctacagcccaacgtcccccagctacagccccaccagc
ccctcctattcccccacctccccctcctactcccccaccagccccagctactccccaact
tctcccagttactcaccaactagccccagctactccccgacctctcccagttactctcca
accagtccctcttacagccccacttcacccagttactccccgacatctccctcctattcc
cccacctccccctcttactcaccaaccagtcccagctactccccgacatcgcctaactat
acccccacttcacccaactacagccccacctcccctagttacagccccacctctcccagt
tatacacccacctctccaaattacagtcccacctcgcccagttacagtcccacctcaccc
agttacagccctacctcccccagctactcgccttctagccctcgctacaccccccagtcg
ccaacctatactcccagctctcccagttacagtcccagcagtcctagctattccccaacc
agtcccaaatactcccccaccagcccttcctacagccccagctctccagaatacacaccc
acttctcccaaatacagccctaccagtccaaaatactccccgacctctccaaaatactcc
cccacctccccaacctactctcccaccacgccaaaatactcccccaccagccctacctac
tcccccacctccccagtctacacccccacctccccgaagtactctcccacctcgcccacc
tactctcccacctccccgaaatactcgcccacctcccccacgtactcgcccaccagcccc
aagggctcgacctactcccccacgtccccgggctactctcccacgtcccccacctacagt
ctcaccagtccggccatcagccccgaagacagcgacgaggagaactga
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integrated database retrieval system
