KEGG   Cetorhinus maximus (basking shark): 144679998
Entry
144679998         CDS       T12026                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
cmam  Cetorhinus maximus (basking shark)
Pathway
cmam03018  RNA degradation
cmam03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    144679998 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    144679998 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmam03019]
    144679998 (lsm6)
   03041 Spliceosome [BR:cmam03041]
    144679998 (lsm6)
Messenger RNA biogenesis [BR:cmam03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     144679998 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     144679998 (lsm6)
Spliceosome [BR:cmam03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    144679998 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 144679998
NCBI-ProteinID: XP_078397190
LinkDB
Position
1:57035580..57041977
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRL
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagcctacgaaagcaaacgcccagcgattttctgaaacagatcatagggagaccagtg
gtggtcaaactgaactcgggtgtggattaccgaggtgttttggcttgtctggatgggtat
atgaatatagcattggaacaaacagaagaatacgtaaatggtcaacttaagaacaagtac
ggagatgcatttattcgaggcaacaatgtgttgtatataagcacacagaagagaagactt
tag

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