KEGG   Croceicoccus marinus: A9D14_09700
Entry
A9D14_09700       CDS       T04890                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
cman  Croceicoccus marinus
Pathway
cman03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cman00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A9D14_09700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cman03019]
    A9D14_09700
Enzymes [BR:cman01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     A9D14_09700
Messenger RNA biogenesis [BR:cman03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     A9D14_09700
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Utp25_C AAA_19
Other DBs
NCBI-ProteinID: ARU16409
UniProt: A0A1Z1FC60
LinkDB
Position
2024811..2026238
AA seq 475 aa
MSYFSDLGLAEPITRALTSKGYDEPTPIQRQAIPALMEGRDLLGIAQTGTGKTAAFALPS
IHRLVENEKRPQAASCRMLVLSPTRELAAQIADNMRFYAKNTRLQVQCIFGGVPAGKQAK
KLVAGTDILVATPGRLLDLIDQRALTLRDVEIFVLDEADQMMDLGFIKPLTRVAALLPQD
RQSLFFSATMPDAIASLGKRFIKDPVKVEVAPQSTTAERVEQFAIHIDQSEKQSLLTLSL
LKGIESGEIDRTLVFTRTKHGADRVVRHLAAAGINAAAIHGNKTQAQRTRALDGFRDGKV
PVLVATDIAARGIDVSGVSHVFNFEIPNVPEQYVHRIGRTARAGADGMAISFVAPDEKPY
MRDIELLTKNKPAILPIPENFVANAAKLPKPTRAPAGAERNPDARGGRGRGGGGGGGGRG
RSGGGGSKQFEDRQQRKSAENRGDGLPRDDMGRKRRFRPKGANGVGAHKGAVKAR
NT seq 1428 nt   +upstreamnt  +downstreamnt
ttgtcctatttttcggatctcggcctcgccgagcccattacacgcgctctgacctccaag
ggttatgacgagccgaccccgatccagcggcaggcgatccccgccctgatggaagggcgc
gacctgctgggcatcgcccagaccggcaccggcaagaccgctgccttcgcgctcccctcg
atccaccgcctcgtcgaaaacgaaaagcgtccgcaggcggcctcgtgccgtatgctggtg
ctgtcgccgacgcgcgaattggcggcgcagatcgccgacaacatgcgcttctatgccaag
aacacgcggctgcaggtgcagtgcatcttcggcggcgttcccgccggcaagcaggcgaag
aagctggtcgctggcaccgacatcctcgtcgccacgcccggccgcctgctcgacctgatc
gaccagcgcgcgctgaccctgcgcgatgtcgagattttcgtgctggacgaagccgaccag
atgatggaccttggcttcatcaagccgctgacccgcgttgccgccctgcttccgcaggac
cggcagagcctgttcttctcggccaccatgcccgatgcgatcgccagcctcggcaagcgc
ttcatcaaggacccggtgaaggtcgaggtcgccccgcagtcgaccaccgccgagcgggtc
gagcaattcgcgatccacatcgaccagagcgagaagcagtcgctcctcaccctctcgctg
ctgaaaggcattgagagcggcgagatcgaccgcaccctcgtcttcacgcgcaccaagcac
ggcgccgaccgcgtcgttcgccatttggccgcggcgggcatcaatgccgccgcgatccac
ggcaacaagacgcaggcacagcgcacccgcgcactcgacggctttcgcgacggcaaggtg
ccggtgctggtcgccaccgacatcgcggcgcgcggcatcgacgtttcgggcgtttcgcac
gtcttcaacttcgaaatcccgaacgtgcccgaacaatatgtccaccgcatcggccgcacc
gcgcgtgcgggtgcggacggcatggcgatcagcttcgtcgcgcccgatgaaaagccgtat
atgcgcgacatcgagcttctgacgaagaacaagcccgcgatcctgccgatcccggaaaac
ttcgttgccaatgcggcgaagctgcccaagcccacccgcgcgccggccggtgccgaacgc
aaccccgacgcacgcggcggacgcgggcgcggcggcggcggcggcggcggcggacgcggt
cgcagcggcggcggcggatccaagcagttcgaggatcgccagcagcgcaagtcggccgag
aaccgcggcgacggccttccgcgcgacgacatgggccgcaagcgccgcttccgacccaag
ggcgcgaatggcgtgggcgcacacaagggcgcggttaaggcccgctaa

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