Croceicoccus marinus: A9D14_09700
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Entry
A9D14_09700 CDS
T04890
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cman
Croceicoccus marinus
Pathway
cman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9D14_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cman03019
]
A9D14_09700
Enzymes [BR:
cman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9D14_09700
Messenger RNA biogenesis [BR:
cman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9D14_09700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ARU16409
UniProt:
A0A1Z1FC60
LinkDB
All DBs
Position
2024811..2026238
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AA seq
475 aa
AA seq
DB search
MSYFSDLGLAEPITRALTSKGYDEPTPIQRQAIPALMEGRDLLGIAQTGTGKTAAFALPS
IHRLVENEKRPQAASCRMLVLSPTRELAAQIADNMRFYAKNTRLQVQCIFGGVPAGKQAK
KLVAGTDILVATPGRLLDLIDQRALTLRDVEIFVLDEADQMMDLGFIKPLTRVAALLPQD
RQSLFFSATMPDAIASLGKRFIKDPVKVEVAPQSTTAERVEQFAIHIDQSEKQSLLTLSL
LKGIESGEIDRTLVFTRTKHGADRVVRHLAAAGINAAAIHGNKTQAQRTRALDGFRDGKV
PVLVATDIAARGIDVSGVSHVFNFEIPNVPEQYVHRIGRTARAGADGMAISFVAPDEKPY
MRDIELLTKNKPAILPIPENFVANAAKLPKPTRAPAGAERNPDARGGRGRGGGGGGGGRG
RSGGGGSKQFEDRQQRKSAENRGDGLPRDDMGRKRRFRPKGANGVGAHKGAVKAR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctatttttcggatctcggcctcgccgagcccattacacgcgctctgacctccaag
ggttatgacgagccgaccccgatccagcggcaggcgatccccgccctgatggaagggcgc
gacctgctgggcatcgcccagaccggcaccggcaagaccgctgccttcgcgctcccctcg
atccaccgcctcgtcgaaaacgaaaagcgtccgcaggcggcctcgtgccgtatgctggtg
ctgtcgccgacgcgcgaattggcggcgcagatcgccgacaacatgcgcttctatgccaag
aacacgcggctgcaggtgcagtgcatcttcggcggcgttcccgccggcaagcaggcgaag
aagctggtcgctggcaccgacatcctcgtcgccacgcccggccgcctgctcgacctgatc
gaccagcgcgcgctgaccctgcgcgatgtcgagattttcgtgctggacgaagccgaccag
atgatggaccttggcttcatcaagccgctgacccgcgttgccgccctgcttccgcaggac
cggcagagcctgttcttctcggccaccatgcccgatgcgatcgccagcctcggcaagcgc
ttcatcaaggacccggtgaaggtcgaggtcgccccgcagtcgaccaccgccgagcgggtc
gagcaattcgcgatccacatcgaccagagcgagaagcagtcgctcctcaccctctcgctg
ctgaaaggcattgagagcggcgagatcgaccgcaccctcgtcttcacgcgcaccaagcac
ggcgccgaccgcgtcgttcgccatttggccgcggcgggcatcaatgccgccgcgatccac
ggcaacaagacgcaggcacagcgcacccgcgcactcgacggctttcgcgacggcaaggtg
ccggtgctggtcgccaccgacatcgcggcgcgcggcatcgacgtttcgggcgtttcgcac
gtcttcaacttcgaaatcccgaacgtgcccgaacaatatgtccaccgcatcggccgcacc
gcgcgtgcgggtgcggacggcatggcgatcagcttcgtcgcgcccgatgaaaagccgtat
atgcgcgacatcgagcttctgacgaagaacaagcccgcgatcctgccgatcccggaaaac
ttcgttgccaatgcggcgaagctgcccaagcccacccgcgcgccggccggtgccgaacgc
aaccccgacgcacgcggcggacgcgggcgcggcggcggcggcggcggcggcggacgcggt
cgcagcggcggcggcggatccaagcagttcgaggatcgccagcagcgcaagtcggccgag
aaccgcggcgacggccttccgcgcgacgacatgggccgcaagcgccgcttccgacccaag
ggcgcgaatggcgtgggcgcacacaagggcgcggttaaggcccgctaa
DBGET
integrated database retrieval system