Colossoma macropomum (tambaqui): 118796798
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Entry
118796798 CDS
T09004
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04382
Cornified envelope formation
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04518
Integrin signaling
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118796798
04518 Integrin signaling
118796798
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118796798
09142 Cell motility
04820 Cytoskeleton in muscle cells
118796798
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118796798
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118796798
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118796798
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118796798
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118796798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118796798
NCBI-ProteinID:
XP_036411801
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MRLLTFGVRWLILTVWWVSLLYVSEQQVSAGEALEPCNGRDCSVCRCHPAKGARGAPGSL
GIQGPQGESGPRGPPGQPGEKGRRGNQGEPGLEGPPGDRGSTGVPGFSGANGVDGHVGAG
GLPGPPGLDGCNGTRGDPGFPGLPGINGIPGPQGQPGPKGMKGEPTLVSKGGPPGNPGLP
GSPGLPGFPGIDGLPGVRGWPGPAGFIGPAGPPGLQGPPGDSSLSLPGPKGEEGDLGPQG
PPGPYEVVEPPEDHLIKGAKGEKGDNGACGPDGPDGIATGPGVKGEKGIPGLPGPRGLPG
IDGLTGLPGLQGLHGDPGAPGHRGHPGLKGERGDAGLKGPPGDGIPGYPGDPGPRGPSGP
PGDLGLMGNRGSPGYPGHTLLGRTGPPGPQGSQGPQGFKGDPGLSNVTELEPGRPGPPGP
PGPAGIKGDRGPPGLSGHCLPGPVGLPGDRGDRGFPGERGLKGQKGDNYCTSGGSAQPGP
IGPPGPPGYNGLPGAAGQKGEPGPEGDPGLNGPPGRQGLPGPRGFKGQKGDPYFSSVRGI
KGDQGDPGPAGPSGASGRQGLPGQTGVVGEPGPPGDGYPGLKGFKGYPGAAGLKGLTGPA
GPQGLGVPGQRGPPGPPGDQGPEGPPGFPGPPGPRGDSVQCIPGNPSPEGPPGDPGDPGP
PGPPGPPGYGGSPGLPGPKGEKGDDGDSRGYGRPGFPGLPGDPGDPGPPGRSFSGARGSP
GPQGRPGLKGPPGDSLPGRSGPPGQTGFPGNPGPKGTRGQRGPDGLSGQPGNPGHVIECD
RQPGDVGDPGPPGLPGVSPTFCSGEQGPPGPQGRPGLTGLLGINGVKGEKGLAGFPGTGL
KGPQGQPGPPGPPGAPGPPGLIGAPGEPGLFGLSGSKGIRGHPGLAGLIGLPGDPGFPGP
PGRPGVRGDEGETGVTGDVGYKGVKGSKGYPGPPGLLNSIKGIKGLPGPNGRPGFTGPRG
PKGSPGLPGEHGLDGLNGGPGFQKGFPGLPGRSGPQGPPGPPGPKGYPGAIGFPGHFGDL
GGPGLPGLNGAPGNRGLPGIKGDEGDSVGYPGPPGPKGFKGVSGPSECDAEVGAPGDPGD
RGLQGPQGLPGTCGSPGPPGLRGPPGNVGPPGFSHFGLPGPPGPSGPPGHKGYPGPPGLK
GFPGPPGLQGLNGLPGPKGEKGCRGPDMEGPPGIQGDPGNQGLSGSPGNPGISHPGQKGL
KGQPGDPGPQGLYGPPGVQGRNCDISIPGDTGDPGPTGLSGPPGPPGEIGPPGLIFPHPG
DQGDVGPPGPPGTKGLRGTEGPSGVTGFSGPPGPKGLQGLPGSRGPPGPAGLEGRAGFPG
LKGDKGITGSKGAQGTPGRVIIGPPKPTNKGPQGKPGSPGPSGFKGTSGLPGNPGPIGPK
GLMGSPGPPGQLGAAGIPGPPGDAGEPGHQGLVGPQGPPGPKGDPGFPGNGTISNSGFLL
VIHSQSEAIPECPAGMPLLWIGYSLLYLEGQERAYTQDLGQAGSCLHIFSTMPFSYCNSA
ACRYASRNDKSYWLTTNKPVPMMPVLDEEIRQYISRCVVCEAPAPAVAVHNQDSNVPSCP
PGWSSLWIGYSFLMHTGSGDEGGGQSLTSPGSCLKDFRTQPFVECQGLRGTCHYFANIYS
FWLTRVSYEEEFGTALQGATLKAADQQRNRISRCHVCMRQRQIIQLRSP
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgttgacctttggggttagatggctaatcctcactgtctggtgggtttctctg
ctgtatgtttcagagcagcaggtcagtgcgggtgaagctctggagccgtgtaatggcaga
gactgttcagtgtgcaggtgccatccagctaaaggagcacggggggctcctggcagtctg
ggcattcagggccctcagggtgagtcagggccacgtggaccaccaggacagccaggggaa
aagggcagacggggaaaccagggagagcctgggctggaggggcctccgggagacagaggg
agcactggtgttccgggtttttccggagcaaatggtgtcgatggacatgttggtgctgga
ggtcttccgggcccacctggtctagatggctgtaatgggactcgtggggatcctggcttt
cctgggctgcccgggattaatggaatacctggacctcagggccagcctggtcctaaagga
atgaagggggagccaacacttgtatccaaaggaggacctccaggaaaccctggtctacct
ggttctcctggcctacctggatttcctggcattgatgggctccccggagttaggggttgg
cctggtccagctggctttattggtcctgctggtcctccagggttacaaggaccacctggt
gatagcagtctgtcacttccaggaccaaaaggggaagagggagatcttggacctcaaggt
cctcctggtccatatgaggtggtggagccccctgaggatcacctcattaaaggagcgaag
ggggagaagggggataacggagcctgcgggccagatggaccagatgggattgcaacaggt
cctggggtgaaaggagaaaagggaattccaggactgcctggccctcggggtctcccaggt
attgatggcttgacgggacttccaggtttacagggacttcatggggacccaggtgcgcct
ggtcaccgtggtcatcctggtctgaagggtgaaagaggagatgcaggtttgaaaggtcct
ccaggtgatggcattccaggttacccaggtgacccagggccacgtggaccatcagggccc
ccaggggatttgggactgatgggaaaccgaggaagccctggatacccaggacacaccctc
ctaggtcgaactggccctcctgggccccagggttctcagggacctcaggggtttaaggga
gatccgggtttgtcaaacgttactgaattagaaccaggacgtccagggccacccgggccg
cctgggcccgctgggataaaaggagatagaggcccacctggtctatcaggtcattgcctc
cctggtcctgtgggactgcccggggatagaggagacagaggatttcctggggaacgagga
cttaaagggcaaaaaggtgacaattactgcacctctggtggatcagcacagcctggccct
atcggcccacctggacctccaggatataacgggcttcctggggctgcaggacagaagggt
gagccagggccagaaggagacccaggtctgaacggccctcctggaaggcaaggtctacct
ggtcctcggggtttcaaaggtcagaaaggagacccttatttttcaagtgtaagaggcata
aagggagatcagggcgatcctgggcccgctggtccatcaggtgctagtggtcgacaaggc
cttccaggacaaactggtgtggttggagaaccaggaccaccaggagatggttatccaggt
ctcaaaggattcaaaggataccccggtgctgcagggcttaaaggactcacagggcctgca
ggtcctcaaggcctaggtgttccagggcaaagggggccacccgggccaccaggagaccag
ggccctgaaggcccacctggatttcctgggcctccaggtcctcgaggggattcggttcag
tgtattccgggcaaccctagcccagaaggcccgccaggcgaccctggagacccaggaccc
cctgggccaccgggaccacctggatatggaggctctcctggtctaccaggaccaaaaggc
gaaaaaggagatgatggagacagtagggggtatggacgtccaggttttccaggattacca
ggtgatccaggtgatccaggtcctcctggacgtagctttagcggtgcaaggggatcacca
gggccgcaaggacgtccagggttaaaggggcctccaggagattccctcccaggcaggtca
ggccctcctggacaaacaggatttcctggaaaccctggtccaaagggcacgcggggtcaa
cgaggtcctgatggattaagcgggcaacctggaaatcctggacatgtgatagaatgtgat
agacagcctggagacgttggggacccaggtccacctggactaccaggggttagccctact
ttttgtagtggtgagcaaggccccccaggtccccaaggacgtccaggcctgactgggctg
ctgggcatcaatggcgttaaaggagaaaagggactggctggttttcctggaactggactg
aagggacctcaaggacagcctggtccacctggtcctcctggtgcccctggacctcctggc
ttaataggagcacctggtgaaccagggctgtttgggctttctggatcaaaaggaattaga
ggacatcctgggttagctggattaataggattacctggagacccaggttttccagggcca
ccaggtagaccaggagtgagaggtgatgagggtgaaactggtgtgacaggagacgtgggc
tacaagggagtcaaaggtagcaaaggatatccaggacctccaggcctcttaaattccata
aaaggcattaagggattacctgggcccaatggaagaccaggattcacaggacctagaggt
cctaaaggttcacctggattacctggtgaacatggtctggatggactgaatggtggccct
gggtttcagaaaggcttccctggcttacctggaagaagtggccctcagggaccgccaggt
ccacctgggcccaaaggatatccaggagccataggattcccaggacattttggagatctg
ggtggtccaggtcttcctggactaaatggtgcaccaggcaatcgagggctaccaggcatc
aaaggtgatgaaggagactctgtgggatatccaggtccacctggaccaaagggctttaag
ggtgtcagtggaccaagcgaatgtgatgctgaggttggagccccaggggatccaggggat
cgaggactccaggggccacagggattgcctggtacctgtggttctcctggaccacctgga
ctgcgtggtcctccaggaaatgtgggtccaccaggtttttcacattttgggcttccaggt
cctccaggaccttcaggaccaccaggacataaaggttatccaggtccaccaggtctgaaa
ggatttccgggacctccaggcctccagggcctcaatggtctccctggtcctaaaggggag
aaaggctgtagaggtcccgatatggaaggtcctcctgggatacaaggtgatcctggaaac
cagggactgtctggttccccaggaaatccaggaatctcccatccaggacagaaaggcttg
aaaggccagcctggagacccaggtccccaaggcctctatggtccacctggtgtccaaggc
agaaactgtgacatatcgattccaggagacactggggacccaggcccaactggactcagc
ggacctccaggtccaccaggtgaaattggtcctccaggtttgattttccctcacccagga
gaccaaggggatgtgggaccacctgggcccccagggacaaagggcttgagaggtacagag
gggccctcaggagttactgggttcagtggacctccaggacccaaagggctgcaaggattg
cctggttcaagaggccccccaggaccagcaggtcttgaaggcagagctgggtttccaggg
ctcaagggagataaagggataacagggagtaagggggcccaaggtacacctggaagagtt
atcattggccctcccaaaccaaccaataagggaccacaaggaaagccaggatcacctggg
ccatctggattcaaaggaacatctggcctcccaggaaatccaggacccataggacctaaa
ggtctgatgggcagtcctggtccacctgggcagttaggagctgcaggaattccaggtcct
cctggggatgctggtgagcctggacatcaaggacttgttggaccacaaggccctccaggc
cctaagggagatcctggattcccaggcaatgggaccatcagcaattctgggtttctccta
gtgatccacagtcagtctgaggcaatacctgagtgtccagcaggcatgcccctcctttgg
attggttacagccttctttatctggagggtcaggagagagcctacacgcaagacctgggc
caagcaggctcatgcctgcatatcttcagcaccatgcccttctcctactgtaactctgct
gcctgtcgctacgccagtcgcaatgacaagtcctactggctgaccaccaacaaacctgtg
cccatgatgcccgtgttagacgaagagatccgccagtacatcagccgctgtgttgtgtgt
gaggcgcccgctcctgcagtggcagtccataaccaagactccaacgtgcccagctgcccg
cctggctggagcagtttatggataggttactctttcctcatgcacactggatctggcgat
gaaggtggcggtcagtctctgacctctcctggaagctgtctgaaggacttcaggacgcag
ccctttgtggaatgccaaggcctgcgtggcacgtgccattactttgccaacatctacagc
ttttggctgactcgcgtgagctacgaggaggaatttggtacggccctgcagggggcaacg
ctgaaggctgcagaccagcagcggaaccgcatcagccgatgtcacgtctgcatgaggcag
cgacaaatcatacagctgaggtcgccatga
DBGET
integrated database retrieval system
