KEGG   Colossoma macropomum (tambaqui): 118797090
Entry
118797090         CDS       T09004                                 
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118797090 (prpf38b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmao03041]
    118797090 (prpf38b)
Spliceosome [BR:cmao03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    118797090 (prpf38b)
SSDB
Motif
Pfam: PRP38 PBP_like_2
Other DBs
NCBI-GeneID: 118797090
NCBI-ProteinID: XP_036412208
LinkDB
Position
Unknown
AA seq 508 aa
MAANHQQQQQAVNKPSTGKHGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYH
EVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRK
QVMGLITHTDSPYIRALGFMYIRYTQPPADLVEWFESFLDDEEELDVKAGGGCVMTIGEM
LRSFLTKLEWFSTLFPRIPVPVQKMIDQQMKNRPRKLPQKDGKAEEEEEEEEEEDGDRHR
SRTPRRTPSPRRSPNRSRSRSHHRDRHGASFDRELERERDRQRKEREGKDRERDRERDRE
RDRGERDRAADRDRERDRRRSRTPDRGSERRRSRSRERRRSRSNTREKRNERKEREKERE
GESERERSRRKEREHKDRSSGGEKERERSKDKRSKGEAEERRHKEEREERRHREERKSKR
SSRSRSREKRHKAERSSRKRSRSRSRQEVGEEKSRKCERSHSKERPHKRSRSKDRSHRRE
SSNGKEHRPRSASPEPGDGTHGSRAESP
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggcggcgaaccaccagcagcagcagcaggccgtgaacaaacccagcaccggcaaacac
ggcaatgtcctgccgctgtggggcaacgagaagactatgaacttgaaccccatgattctc
acgaacatactgtcgtctccgtattttaaagttcagttgtatgagctgaagacctaccac
gaggttgtggacgagatttacttcaaggtaaaccacgtcgaaccttgggagaaaggcagc
cggaagactgcagggcagactggaatgtgcggaggggtccgcggggtaggcacgggaggc
attgtgtccacagctttctgtctgctgtataagctttttacgctaaagctgacccgcaag
caagtgatgggtctcatcacccacacagactccccgtacatcagagcactcggcttcatg
tacatacgatacacacagcccccagcagatctggttgaatggtttgagtccttcctagat
gatgaggaggagctggacgtgaaagcaggcggtggatgtgtgatgacaatcggagagatg
ctgcgttccttccttacaaagcttgagtggttctcgacgctgttcccgcggatacccgtt
cctgtgcagaagatgatagatcagcagatgaagaaccgcccacgcaaactcccacagaag
gatggcaaggcagaggaggaggaggaggaggaggaggaagaggatggggaccggcaccgc
tccaggacgccaaggaggaccccaagcccccggagatcaccaaatcgctcacgcagtcgc
agccaccaccgagaccgtcatggggcgagctttgaccgtgagctggagagagagagagac
cgccagcgaaaagagagagagggcaaggacagagagagagacagggaaagagacagagag
cgagaccgaggagagagagacagggctgcagacagagacagggaacgagatcgccgacgt
tccagaacgccggaccgaggctcggagcggcgcaggagccgtagcagggaacggcgccgg
agccgcagcaacacccgtgagaaaaggaatgagaggaaagagcgagagaaagagagggaa
ggagaaagcgaaagagagcgcagtcgccggaaagagcgggagcacaaagatcggagcagt
ggaggagagaaagagagggagcgttcaaaagacaagaggagcaaaggagaggctgaggag
cgccggcacaaagaggagagagaggagaggaggcaccgcgaggagaggaagagcaaacgc
tccagccgtagccgcagcagggaaaaaaggcacaaagcggaacgctctagcagaaagcgt
tcccgatccaggagccgacaggaggtaggagaggagaagagcaggaagtgcgaacgcagc
cacagcaaagagcggccgcacaagcgcagtcgtagcaaagatcgctcccacagacgagag
tccagcaacggcaaagagcacaggcccaggagcgccagcccagagccgggcgatggaacg
catggcagccgggctgaatcaccctga

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