Colossoma macropomum (tambaqui): 118797090
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Entry
118797090 CDS
T09004
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118797090 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118797090 (prpf38b)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118797090 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PBP_like_2
Motif
Other DBs
NCBI-GeneID:
118797090
NCBI-ProteinID:
XP_036412208
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MAANHQQQQQAVNKPSTGKHGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYH
EVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRK
QVMGLITHTDSPYIRALGFMYIRYTQPPADLVEWFESFLDDEEELDVKAGGGCVMTIGEM
LRSFLTKLEWFSTLFPRIPVPVQKMIDQQMKNRPRKLPQKDGKAEEEEEEEEEEDGDRHR
SRTPRRTPSPRRSPNRSRSRSHHRDRHGASFDRELERERDRQRKEREGKDRERDRERDRE
RDRGERDRAADRDRERDRRRSRTPDRGSERRRSRSRERRRSRSNTREKRNERKEREKERE
GESERERSRRKEREHKDRSSGGEKERERSKDKRSKGEAEERRHKEEREERRHREERKSKR
SSRSRSREKRHKAERSSRKRSRSRSRQEVGEEKSRKCERSHSKERPHKRSRSKDRSHRRE
SSNGKEHRPRSASPEPGDGTHGSRAESP
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaccaccagcagcagcagcaggccgtgaacaaacccagcaccggcaaacac
ggcaatgtcctgccgctgtggggcaacgagaagactatgaacttgaaccccatgattctc
acgaacatactgtcgtctccgtattttaaagttcagttgtatgagctgaagacctaccac
gaggttgtggacgagatttacttcaaggtaaaccacgtcgaaccttgggagaaaggcagc
cggaagactgcagggcagactggaatgtgcggaggggtccgcggggtaggcacgggaggc
attgtgtccacagctttctgtctgctgtataagctttttacgctaaagctgacccgcaag
caagtgatgggtctcatcacccacacagactccccgtacatcagagcactcggcttcatg
tacatacgatacacacagcccccagcagatctggttgaatggtttgagtccttcctagat
gatgaggaggagctggacgtgaaagcaggcggtggatgtgtgatgacaatcggagagatg
ctgcgttccttccttacaaagcttgagtggttctcgacgctgttcccgcggatacccgtt
cctgtgcagaagatgatagatcagcagatgaagaaccgcccacgcaaactcccacagaag
gatggcaaggcagaggaggaggaggaggaggaggaggaagaggatggggaccggcaccgc
tccaggacgccaaggaggaccccaagcccccggagatcaccaaatcgctcacgcagtcgc
agccaccaccgagaccgtcatggggcgagctttgaccgtgagctggagagagagagagac
cgccagcgaaaagagagagagggcaaggacagagagagagacagggaaagagacagagag
cgagaccgaggagagagagacagggctgcagacagagacagggaacgagatcgccgacgt
tccagaacgccggaccgaggctcggagcggcgcaggagccgtagcagggaacggcgccgg
agccgcagcaacacccgtgagaaaaggaatgagaggaaagagcgagagaaagagagggaa
ggagaaagcgaaagagagcgcagtcgccggaaagagcgggagcacaaagatcggagcagt
ggaggagagaaagagagggagcgttcaaaagacaagaggagcaaaggagaggctgaggag
cgccggcacaaagaggagagagaggagaggaggcaccgcgaggagaggaagagcaaacgc
tccagccgtagccgcagcagggaaaaaaggcacaaagcggaacgctctagcagaaagcgt
tcccgatccaggagccgacaggaggtaggagaggagaagagcaggaagtgcgaacgcagc
cacagcaaagagcggccgcacaagcgcagtcgtagcaaagatcgctcccacagacgagag
tccagcaacggcaaagagcacaggcccaggagcgccagcccagagccgggcgatggaacg
catggcagccgggctgaatcaccctga
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integrated database retrieval system