Colossoma macropomum (tambaqui): 118798055
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Entry
118798055 CDS
T09004
Symbol
parn
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118798055 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118798055 (parn)
Enzymes [BR:
cmao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118798055 (parn)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118798055 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_NFXL1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
118798055
NCBI-ProteinID:
XP_036413266
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MEITRQNFKESLSTIYSAVEEADFLAIDGEFSGISDGPSVSALTNGMDTPEERYAKLRKH
SMDFLLFQFGLCTFRYDQAQSKYLTKSFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLNXEEEAQLREQYEERRNQMNGSGTPSYISPLSGKGPVNVPDEHKDF
INRVVEKVEALLNNSEKTVDLEPCSGFQRKLIFQTLNWKYPKGLHVETVETEKKERFIQV
SKVDEEERRRIEQQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEELDDFKEVTMCVFPRLLDTKLMASTQPFKDLITNTSLAELEKQLKDKPFKAPKVE
CSEGFQCYDTAAEQLHEAGYDAYITGLCFISMANYLGSFLTPPRAHISARSKLIEPFYNK
LFLMRVVDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQLEQVQIAMNTSQYAESYRIQTYADYIQSKQKNTNTNKKWAEDGWANTSYRAAAM
TTSSTCSHMHNRSLTGKRSISPTQEDQTSDFSGVADSNWSHYTKKVKTDAGASGGCGQTY
ADAVDSTTDSWLKAQPGEGAASTSPAQGEAGSEEADAWPELPTNQSQGSQATSTGLFDVP
QVW
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggagataacacggcaaaattttaaggagagtctgagcaccatatacagcgctgtagag
gaggctgacttcctcgccattgatggagagttttcgggaataagtgatggtccctcggtc
agtgcgctgaccaatggcatggacacacctgaggagcgctatgcgaagctcaggaagcac
tccatggactttctgctctttcagtttggcctctgcacgtttagatacgaccaggcacag
tcaaagtatcttacaaagtcttttaatttttatattttcccaaagcccttcagcaggact
tctccagatattaagtttatttgtcagagttccagtatagatttcctggctagtcaggga
ttcgacttcaacaaagttttccgcagtgggatcccatatctaaatncagaagaagaagct
cagctgagggagcagtatgaggagcggaggaaccagatgaatggatctggaacaccatca
tacatctctcctttgtctggtaaaggacctgtcaatgtaccagacgaacacaaagacttc
atcaacagagttgtggagaaggtggaggctcttctgaacaactctgaaaaaacagtggac
ctggagccatgctcagggtttcagaggaagctgatctttcagactctgaactggaaatac
cccaaaggtcttcatgttgaaacggtggaaactgaaaagaaagagcggtttattcaggtc
agtaaggtggatgaagaagagcggaggagaatagagcagcagaaacaggagagagagcag
gaggaactgaacgatgcggttggattctccagagtgatccacgccatctccaaatctggt
aagctggtggttggccataacatgctgctggacgtcatgcacaccatccaccagttctac
tgtccactgccagaggagttggatgatttcaaagaggttacgatgtgtgtgtttcccagg
cttctggacactaagctgatggcatcaacacaaccgttcaaggacttgatcacaaacaca
tctctggccgagttggagaagcagttgaaggacaaaccctttaaagctccaaaagttgag
tgttctgagggatttcagtgttacgacactgcagctgaacagctccatgaggccggatac
gacgcctacatcactggcctctgcttcatctccatggccaactacctgggttcgttcctc
actcctcccagagctcacatctctgctcgctccaaactcatcgagcccttctacaacaaa
ttgttcctcatgcgagtggttgacatcccttacctgaacatcagcggaccagacttgcag
ccgaagagagatcatgtcttgtacgttacattccctaaagaatggaagacgagtgacctg
taccagctattcagcgcattcggtaacatccaggtgtcgtggattgacgacacatcggcg
tttgtttctctcagccagctggagcaggtgcagatcgcgatgaacaccagtcagtacgcg
gagagctaccggatccagacgtacgccgattacatacagtccaaacagaaaaacacgaac
acaaacaagaagtgggctgaggacgggtgggccaacacctcctacagggccgctgccatg
acaacctcgtctacgtgcagccacatgcacaacaggtcgctgacggggaagaggagcatc
agccccactcaggaagatcaaacctctgacttcagcggcgtcgccgatagcaactggagt
cactacacaaagaaggttaaaacagatgctggagcgagtggcggatgtggtcagacgtac
gctgatgctgtggactcgacgacggacagctggctcaaagctcagccaggagaaggtgca
gcgtctaccagcccagcccagggagaggcggggtctgaggaagccgacgcctggccagag
ctgccaaccaatcagagtcagggttctcaggccacctctacaggactgtttgacgtccct
caagtttggtag
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