KEGG   Colossoma macropomum (tambaqui): 118798281
Entry
118798281         CDS       T09004                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    118798281 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmao03021]
    118798281 (taf5)
   03036 Chromosome and associated proteins [BR:cmao03036]
    118798281 (taf5)
Transcription machinery [BR:cmao03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     118798281 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     118798281 (taf5)
Chromosome and associated proteins [BR:cmao03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     118798281 (taf5)
    STAGA complex
     118798281 (taf5)
    TFTC complex
     118798281 (taf5)
    SAGA complex
     118798281 (taf5)
    SLIK complex
     118798281 (taf5)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st ANAPC4_WD40 DSE1_N PAC11 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SCAP CFAP251_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_SPT8 ASA1 Beta-prop_DCAF12 Beta-prop_WDR19_1st WD_LRWD1 Tricorn_2nd Beta-prop_NOL10_N Beta-prop_Nup120_160 WD40_like LisH_TPL Beta-prop_ACSF4 RAB3GAP2_N LisH_PAC1 PROPPIN Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 118798281
NCBI-ProteinID: XP_036413586
LinkDB
Position
Unknown
AA seq 732 aa
MAAVQDGGSELEGEKEPQPELLSDGSSAPAAAPASKPEEQQQQQQTLLAVLQFLKRNKLI
ESVDALRREAGLAEELDEAPGSEAGGGGGGTAAGIGDSGDASSLLSRVAGAAQSGAASAP
AKGGEDQPDVSVVLSAYSQQGDPSLYQTYYSGLKKFIESVLDCHRAELSQLFYPLFVHMY
LELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLSGLTKKEHMKGNETLLDFRTSKFVLR
ISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEARREAN
KAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDNMGSKSKKQDPNAPQQNRIP
LPELKDSDKLDKIMHMKEATKKIRLGPETLPSICFYTFLNAYQGLTAVDFTDDSSLIAGG
FADSTVRVWSVTPKKLRKVKSAADLSLIDKESDDVLERIMDEKTASESKILYGHSGPVYG
VSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRV
ARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSADRTIRLWDVLNGHCVRIFTGH
KGPIHSLAFSPNGKYLASGSTDGRVLLWDIGHGLMIGELKGHTDTVYALKFSRDGEILAS
GSMDNTVRLWDVFKAFDEVETDDFTAATGHIHLPDNSQELLLGTYLTKATPVIHLHFTRR
NLLLAAGSYNSQ
NT seq 2199 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaggacggagggagcgagctggagggcgagaaggagccgcagcccgag
ctcctgagcgatggctcctcggcgccggccgcggctccggcctccaagccggaggaacaa
cagcagcagcagcagaccctgctggccgtgctgcagttcctcaagaggaacaagctgatc
gagtctgtggacgcgctgcggcgggaggcgggactggcggaggagctggacgaggctccg
ggcagcgaggctggaggaggcggcggaggaaccgcggcagggattggcgacagcggggac
gctagctctctcctcagccgtgtggctggagccgcccagagcggagcagcctcggcgccg
gctaaaggtggagaggaccagccggacgtcagcgtcgttctttcagcgtacagccagcag
ggtgacccgtccttgtatcagacctactacagcgggttgaagaagttcatcgagtcagtg
ctggactgtcacagggccgagctgtcacagctcttttatccactctttgtgcacatgtac
ctggagctggtctacaacaaccatgaaaatgaagccaaggctttttttgagaagttcagt
ggggaccaggaatgttactaccaggacgacttgcgggtgctctctggcctgaccaagaaa
gagcatatgaagggcaacgagacgctgctggacttccgcaccagcaaatttgtgctgcgc
atctcccgtgactcctaccagctgctgaagaggcacctgcaggagcggcagaacaaccag
atctggaacatcatccaggaacatctctacatcgatatctttgatggcatgccacgcagc
aagagccagatagacagcatgtcaggcagcctggcaggagaggccagacgtgaagctaat
aaggccaaggtattctacgggttgctgaaggaaccagagattgaggtcccccttgatgac
gaagatgaagaggcagagaatgaagagggtaaaccaaagaagaagaagcccaagaaggac
aacatgggttcaaaaagcaagaaacaggatcctaatgcaccacagcaaaacaggattcct
cttccggagctgaaggactctgataaactggataaaattatgcacatgaaagaggccacc
aagaagattcggctaggtccggaaacgttgccttctatatgcttctacacgttcctcaat
gcttatcagggtctgacagcagtagacttcacagatgactccagcctgatagcaggaggt
tttgctgattccacagtgcgcgtgtggagcgtcacacccaagaaacttcgcaaagtcaaa
tcagcagcggatctcagtctgatagacaaggagtctgatgatgtgctggaaaggataatg
gacgagaaaacagccagcgagtccaagatcctgtacggtcacagtggaccagtgtatggc
gtcagcttcagtcctgacaggaactacctgttgtccagctctgaggatggcacagtaagg
ctgtggagcttacaaacattcacctgtttggttggatataaagggcacaactatccagtg
tgggacactcagttttctccatacggttactactttgtgtctggaggacatgacagagtg
gcacgcttgtgggcgactgaccactaccagccgctgcgcatgtttgctggacatctcgct
gacatcacctgcacacgcttccaccccaactccaactacgtggccacggggtcagctgat
cgcaccattcgcctttgggatgttctgaatgggcactgcgtccgcattttcacaggccac
aagggacctattcactccctggcattctcacccaacgggaagtacctagcgtctggatcg
acggatggcagggttctgttgtgggacatcggccacgggcttatgatcggtgaactgaag
ggccacaccgacacagtctatgctcttaagttcagcagagatggcgagattttagcttca
ggctccatggacaatacagtacggttgtgggacgttttcaaggcttttgatgaagtagaa
acagatgactttactgcagctacaggccacattcatttacctgacaactcacaggagtta
ttactgggaacatacctcacaaaagccacaccagtcatccatcttcacttcaccagacgc
aacctgctactggctgccggttcatacaactcgcagtga

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