Colossoma macropomum (tambaqui): 118798641
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Entry
118798641 CDS
T09004
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118798641 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118798641 (smarcc1a)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118798641 (smarcc1a)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118798641 (smarcc1a)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118798641 (smarcc1a)
PBAF complex
118798641 (smarcc1a)
GBAF(ncBAF) complex
118798641 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
DUF919
Raftlin
Motif
Other DBs
NCBI-GeneID:
118798641
NCBI-ProteinID:
XP_036413983
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MAATGAGAAGGTAGGTGTGAAGTGASVGRKKDGGPSAKFWESGETVSQLEAVRLWIGKHY
KKYVQADSPSCKSLAGLVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPAGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPVVYISSDVDQKQASK
LKDIIKRHQGSITDDKSKATHLIYPSPSQSEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSPSDVDGEVEDPPSSEKPWRVHAKWVLDTDAFNEWMNEEDYEVDENRKPVSFRQRIFPR
EEESSRTPDRKERKSLAGGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRDDDEQ
DEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENAPVKGGTVADLDEQEDGSVASGGKDD
EEQGKMEVNRLIDSSEDNVTEQTHHIVIPSYSAWFDYNSIHEIERRALPEFFNGKNKSKS
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLAGDVCAVMRVHAFLEQWGLVNYQVDAES
RPLPMGPPPTSHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKSKDKPTDLQNFGLRT
DMYSKKNPKTKGGSTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP
IEDPYLENSETTLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARNTGKVDPSFGLESSGIAGTAPEEPEKTETAEPEKMDTDS
EAQQPDKAESKDEAEKPSDSAEKPAEGEKVKSETTEKPEREEEEGEGGEPKAAAADAEKE
KEEAMEVSEEGKEAGDMPEESRKKLELDVGEGNIATAAAAALASAATKAKHLAAVEERKI
KSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEM
KARQQMEQQAAAAAAAAQQGAGGHHGAPPQPHGPPGHGPPPHGPPPHGPLPHGPPPGMHP
GHPGHPGPGYPPMHHPMGPHHPPQTGPMVGPGQPMPGRMMPGPPAGGPPPGGMPPMMGPR
HPGAPNGLYPGPPPPAQPDGIPPAPASALPARPAEN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaccggagcgggagcagccggtggaacagcggggggaaccgggactggagcg
gccggcaccggagcctcggtcggcagaaagaaggacggaggaccgtccgctaagttctgg
gagagcggagagacggtgtcgcagttggaggcggtgcggctgtggatcggaaaacactac
aaaaagtatgtccaggccgactctccgtcatgtaagtctctggcaggactggtggtgcag
ctgctccagtttcaggaggacgcgtttggccgcagggtgagcaacccggccctcaccaaa
ctgcctgcaaagagcttcttggacttcaagccagctggagcactgtgtcatattctgggt
tcagcctacaagttcaagagtgagcagggctggagaagatttgatctgcagaatccatcc
agaatggacaggaatgtggagatgttcatgaatatcgagaaaacgcttgctcagaacaac
tgcctgactcgacctgttgtgtacatttcatctgatgtggaccaaaagcaagcgagcaaa
ctcaaagacatcatcaagagacatcagggctccatcactgacgataagtccaaagcaact
cacctcatctatccctccccatcacagtctgaggaagaggagtggctgcgtcctgttatg
cggaaagacaagcaggtgctggttcactggggcaattacccagacagttacgatacctgg
gtgtcccccagtgacgtggatggagaggtcgaggacccaccgagctcagagaaaccttgg
agggtgcatgccaaatgggtgttggacacggacgcattcaacgagtggatgaatgaggaa
gactacgaggtagacgagaacaggaagccggtgagcttcaggcagcgcatcttccccaga
gaagaggagtcttcccgtacgcccgatcgtaaggagcgaaagtccctggccggaggaaag
aagaggcggcgctctccgtctccaccgagcacccccgctgagtcccgcaagaagggcggc
aagaaagggaatccagggccgcactggaaacgccgtggtcaccgtgatgacgatgagcag
gatgaagatctcaccaaggacatggaggatccttcacctgtgccaggaatggaggaggtc
tcgctgccgaaaaacgtgaatcagaaaaaagacagtgagaacgcaccagtcaaaggagga
actgtggctgatctggatgaacaggaggatggctcagtagcatctggtggcaaggatgac
gaagaacagggtaaaatggaggtgaaccgtctgatcgactctagtgaagacaacgtgacc
gaacaaacccatcacatcgtcatccccagctactccgcctggttcgactacaactctatc
catgaaatcgaaagacgggcattgccagagttcttcaatggcaagaacaaatcaaaatct
ccagaaatatatctggcttatcgtaacttcatgattgatacgtaccggctgaacccgcag
gagtacctcacctccacctcctgcaggcgcaacctggccggagacgtgtgtgctgtgatg
agggtgcatgcgtttctggagcagtggggcctcgttaattatcaggtggacgcggagagc
aggccgctgcccatgggaccccctcctacatcccacttcaatgtcctggccgatactccc
tccggccttgtaccgctacaccaccgccctccgcaggttccccctgctcagcagatgttg
aactttccagagaaaagcaaagacaagcccacagacctgcagaacttcggcctgcggaca
gacatgtactctaagaagaatccgaagactaaaggaggcagtaccagagagtggactgaa
caggaaactctgctgctgttagaggctctggagatgtataaggacgactggaacaaggtt
tcagagcacgtggggagccgcacacaggacgaatgtattctgcatttcctccggctgcct
attgaagacccgtacctagaaaactctgagacgaccctcggacccctggcctaccagcca
gtccccttcagccaatcaggaaaccccgtcatgagcactgtggccttcctcgcctctgtg
gtggaccccagagtggccgctgctgctgccaaggctgccttagaggagttttctcgtgtg
cgtgaggaagttccggcggagctggtggaggctcatgtgaagaaggtgcaggaggcagcc
agaaacacggggaaggtggatccatccttcggcctggagagcagtggcattgctggcact
gcaccagaagagccagagaaaacagaaacagcagaacctgagaagatggacacagattca
gaggctcaacagccagataaggccgagtcaaaagacgaggcagagaagccgagcgattca
gcagagaaaccagcagaaggagagaaggtgaaaagcgaaacgacagaaaaacctgagcgt
gaggaagaagagggtgaaggaggagagccaaaggctgcagcagccgatgctgagaaagaa
aaggaggaggcgatggaagtgtctgaggaagggaaggaagccggcgacatgccagaggag
agcaggaagaagctggagctggatgtgggagaaggaaacattgctactgctgcagcagcc
gcgcttgcctccgctgctactaaagctaagcacctggccgctgtagaggagagaaagatc
aagtctctggtggctctgctggtggagactcagatgaagaagctggagattaaacttcgt
cacttcgaggaactggagacgataatggacagagagaaggaggcgctcgagctccagagg
cagcagctgttgacggagaggcaggcgttccacatggagcagctgaagtacgcagagatg
aaggctcgtcagcagatggagcagcaggcggcggcagcagctgcagcagctcagcagggc
gcagggggtcaccatggagctccacctcagcctcatggacctccaggacatggcccccca
ccacatggaccaccgccccatggccctctgccacacggacccccgccgggcatgcacccc
ggtcaccccggtcatcctgggcccgggtaccccccaatgcaccaccccatgggaccccac
cacccaccacagacaggaccaatggttggaccaggtcagcccatgccaggccgaatgatg
ccagggccccctgctggtggaccgccgccaggcgggatgccccctatgatgggccctaga
cacccgggagcccccaacggcctgtatcctggcccacctcctcctgcacagcctgatggt
ataccaccggctccagcgtctgcgctccctgctcgcccagccgagaactaa
DBGET
integrated database retrieval system
