Colossoma macropomum (tambaqui): 118798724
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Entry
118798724 CDS
T09004
Symbol
smg5
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG5
KO
K11125
protein SMG5
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118798724 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118798724 (smg5)
03032 DNA replication proteins [BR:
cmao03032
]
118798724 (smg5)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118798724 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
118798724 (smg5)
DNA replication proteins [BR:
cmao03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
118798724 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
118798724
NCBI-ProteinID:
XP_036414132
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVSPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
VIETELTSLCQSVLEDFNLVLFYQPTPSHGGQSVSEEEDDHDQACSVLPDSLVFKMVVIC
LMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEDGESEVPPXRTDNIDDAD
VREQAGILPSEKRTLQNGSLEEEDDDDEEDENNEDGSKRERRGAASKKVKKSGEEKQKQK
RKYTRLSMLRRRRCARDEDESDLSEGFESDEEEEEERGGTTDGLGVCRPPANSLGKEGRS
REGAWESGSEEEEEGGTAFDVETDSDMNSQESRSDLEDIEDTENPAPEQQQQEEDEEEHQ
PPQQPPQDERSTPPATNGPLLSSDPSISSNLQAMSSQLFQAKRCFRLAPTFSNVLLSPPS
ASNPAPDTDPTPSQEATPPPGDLSGSATPEIANGTNDNDVESDTEDSEHSNQSFHSEKTL
SERLEILTNQGLIQVVKVFVDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPDGNKMLEA
ELGLKKEVRELVTESEQPDLVQTVLLPEDQALRHLPALSLAHRRLDFTSHRPSLSPLQEC
VVRLCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRMAEEEARRN
RLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTSALCQHLNLLRQLAASGCFII
IIPRTVIDGLDVLKKENPGARDGIRFLESEFRKGNRYIRCQKESGRSFERDKLKRQDIEA
WHLYKMVDSCRQLTGTQNSGDEDTAGMVTILTGHAVAELAERSAPMKSAIQAVAAAGMEL
KNIVEFYQQWKEMG
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacccgggcaagacagcgagccagaggctaaagtcctccacattaagcggctg
tacagggctgtggtggaatctgtacacaagctggatgtcatcattggtagcaagtcatcg
tacagggaggtcttcaagccagagaacatcagcctgcggaacaagctgcgtgaactgtgt
gtgaagctgatgttcctgcaccccgtagactatggccgcaaagcagaggagctgctatgg
aggaaagtctactacgaggtcatccaggtcatcaaaacaaacaagaagcacatccacagc
cgtagcgctctagaatgtgcctataggactcaccttattgctggagtgggcttctaccag
catcttctgctttacatccagtcccactatcagctggagctacaggactgcatcgattgg
acacatgtcaccgaccccctcatcggtcgtaagaagcctgtgtctgctactcctaaggag
atggaatgggctcagatggcttgtcatcgatgtcttgtatatctgggtgaccttgcacgg
taccagaatgaactggcaggcgtggaggctgagcagctggctgaacgcttttaccaccag
gccctgtccgtctcgccccacgtagggatgccttttaatcagttaggtacactagctgga
agtaaattttacaatgtggaagccacctactactaccttcgctgtattcagtcggagact
ccctttgagggagcgtacggaaatctgaagcgtctgtttgacaaagcagccaagatgtac
caccaagtaaagaagcaagagatgaagaagctctcgccatcacgccagagatcaaaagac
atcaaacgactccttgtgagcttcatgtacctccagagtttgctgcagcccaagaacagt
gtgatcgagacagaactgacctctctatgccagtcagtcctggaggacttcaacctggtg
ctgttctaccagcccacacctagccatggcggccagtctgtcagcgaggaagaagacgac
catgatcaggcctgctccgtgctgcccgacagcctggtctttaagatggtggtgatctgc
cttatggtggtacacagcctaaagagaggaggttctaagcagtacagtgcctccattgcc
ttcacactagcacttttctctcatcttgtcaaccatgtcaatatccgactacaagctgaa
cttgaggacggagagagcgaggtcccacctntacgcactgacaacattgatgacgctgat
gtcagagagcaggctggcatacttccttcagaaaaaagaaccctccagaatggttcactg
gaagaggaagacgatgatgacgaggaagacgagaacaatgaagatgggtcaaaaagggag
aggaggggagcagcatctaagaaagtgaagaagagcggagaagagaagcaaaaacagaag
aggaagtatacacgtttgtctatgctccggcgccgacgttgtgcccgcgacgaggatgaa
agcgacctgagtgagggctttgagagtgatgaagaggaggaggaagagcgcggaggtacc
acagatgggctgggggtctgtaggccgccggctaattctctgggaaaggagggacgtagc
agagagggagcctgggagagtggctctgaggaggaagaggagggaggtactgcctttgac
gtggaaaccgactcggacatgaacagccaagagtcacgctctgacctggaggacatagag
gacactgagaacccggcaccggaacagcagcagcaggaagaggatgaagaggagcatcag
ccaccacagcagccgccccaggacgaacgctctaccccaccagccaccaacgggcctttg
ctgtccagtgatccaagtattagcagtaacctgcaggccatgtcttcgcagctgttccag
gccaagcgctgcttccgccttgctcccaccttcagcaacgtgctgctgagcccccccagt
gcctctaaccctgctcctgacacagatcccaccccctcacaagaagccacgccccctcct
ggagacttatctggcagcgctactccagaaattgcaaatggaaccaatgacaatgatgtt
gaatccgacacggaagacagtgagcacagtaaccagtcatttcacagcgagaaaacacta
tctgagagacttgagatactgaccaatcagggccttattcaggttgtgaaggtctttgtg
gattggttgaggacaaataccgacatcattcttatgtgtgcacagagttctcagagcttg
tggaaccgcctctctgtgctgctaaacctactgcctgatggaaacaagatgttagaagca
gagttggggctgaagaaggaggtgagggagctggtgacggagagcgagcagcctgatctg
gtgcagacagtgctgctgccggaggaccaggcgctgcggcaccttcctgcactcagcctg
gcccaccgcagactggatttcaccagccacagacccagcctcagccccctgcaggagtgt
gtggtgcgcttgtgctgcattcgcagctttggccactttctcactaatctccaaggcaac
gtgttgcacttcaatccggaggcaggcattttcaccagcatcagccaatcggaacaggat
aacttggttcagcaggcaaaggcccagtttcgcatggctgaagaagaggcacgcaggaac
aggctcatgcgggacatggcacagctgcgtctgcagttggaggtgtcccagctggaaggc
agccttcagcagcccaaggcccagtcgtccatgtccccatacttagtacctgacacatct
gctctctgccagcacctaaacctgctgagacagctggctgccagtggctgcttcatcatc
atcatcccccgcacagtgatcgatggacttgacgtcctgaagaaagaaaatccaggcgca
agagatggcatccgtttcctagagtccgagtttcggaaaggaaaccgatatatccgctgc
cagaaagagtcagggaggagctttgagagggacaagctgaaaagacaggacattgaagcc
tggcacctttacaagatggtggacagctgccgtcaactgacaggcactcagaacagtgga
gatgaagacacggctggcatggtgaccattctgaccggacacgcagtcgcggaactggct
gagagatcagccccaatgaagtcggccatccaggcagtggcagcggcaggcatggagcta
aagaacatcgtggagttctaccagcagtggaaggaaatgggctga
DBGET
integrated database retrieval system
