Colossoma macropomum (tambaqui): 118799294
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Entry
118799294 CDS
T09004
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118799294 (col2a1b)
04518 Integrin signaling
118799294 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118799294 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118799294 (col2a1b)
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118799294 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
SNARE
Motif
Other DBs
NCBI-GeneID:
118799294
NCBI-ProteinID:
XP_036414936
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MLGFLRSRIVLLCVATYIVHLAVVRCQEEDDQDPGSCTQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIICEELRDCPKPEIPFGECCPICAADQPAPSGWAPGAKGQKGEPGDITDVI
GPRGSPGPMGPPGEQGPRGQRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAHMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGESGAT
GPMGPRGPPGSPGKPGDDGEPGKPGKPGERGPPGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGESGAAGAKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGVPGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEIGRA
GPQGPPGPAGEEGKRGPRGELGAAGPQGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPP
GISGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGIMGFPGPKGANGEPGKPGEKGLVGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPPGFQGLPGPPGPPGEGGKPGDQGVPGEAGASGPTGPRGERGFPGERGGPGPQGLQ
GPRGLPGTPGTDGSKGAIGPAGAPGAQGPPGLQGMPGERGPSGIPGPKGDRGDNGEKGPE
GAPGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGPVGARGAPGDRGETGPPGPAGFA
GPPGADGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDAGPPGRQGDAGLRGPAGPPGEK
GEPGEDGPPGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGTPGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAPGIKGDRGATGPAGAPGAPGAPGAP
GPVGPTGKQGDRGEAGPQGPSGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGQPGDQGAVGPAGPGGARGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSHHEKAPDPLRFMRADQAAGGLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCN
METGETCIYPKPDKIPRKNWWSTKSSDGKHIWFGETMNGGFHFTYGDETLSPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDRATGNLKKALILQGSNDVEIKAEGNSRFRYNVLED
GCTSHTGQWGKTVIEYKSQKTSRLPIVDIAPIDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttaggctttctgagatcgaggatcgtactgttatgtgtggcaacatatattgtgcac
ttagcggttgtcagatgtcaagaagaggatgaccaggatccaggtagctgtacgcaagat
ggtcagcgctatagtgataaggatgtgtggaaacctgagccatgtcgcatttgtgtgtgt
gacactggcacagtcctctgcgatgagataatctgcgaggagctcagagactgccccaaa
ccagagattccatttggagagtgttgccccatctgtgctgctgaccaacctgctcctagt
ggttgggcaccaggtgctaagggacagaagggtgagccaggagacatcacagatgtcatc
ggacctagaggatcacctggtccaatgggaccccctggagaacaaggaccacgtggacag
cgaggagagaaaggagagaagggaagccctggaccccgtggcagagatggtgagcccggt
acacctggaaatccaggaccaccaggacccccaggacctaatggtccacctggccttggt
gggaactttgctgcacacatggctggtggatttgatgataaagcaggcggtgcacaaatg
ggtgtgatgcaaggacctatgggccctatgggtccaagaggaccacctggccccacagga
gcacctggcccacaaggtttccaaggcaatcccggagaacctggcgaatctggtgctact
ggacccatgggtcctcgaggtccccctggttcacctggcaaacctggagatgatggagaa
cctggcaaacctggcaaacctggtgagcgtggccctcctggtccacagggagctcgtgga
ttccctggaactcctggcctgcctggaataaagggacacagagggtatccgggccttgat
ggagcaaagggtgagagtggagctgctggtgctaagggcgaggcaggcgcgcctggtgag
agtggtgctccaggtccaatgggtccacgtggcctgcctggtgaaagaggacgtccagga
ccttctggagctgctggtgctcgaggaaatgatggcttacctggccctgctggtcctcct
ggtcctgttggacctgctggagctccaggcttccctggttccccaggtgctaagggcgaa
gctggccccactggtgctcgaggacctgagggagctcagggaccccgcggagagtcagga
acacctggatcacccggacctgctggagttccaggtaaccctggcactgatggtattcct
ggggccaaaggatcagctggagcccctggtattgctggagcccctggttttccagggccc
cgtgggcctcctggacctcaaggagcaactggacctcttgggccaaaagggcagtctggt
gatcctggtatcccaggtttcaagggtgaggctggcccaaagggagagataggtcgtgct
ggcccccaaggtcctcccggccctgctggagaggagggtaagagaggtcctagaggagaa
cttggtgctgctggaccccaaggaccccctggagagagaggtgctcctggtaaccgtggc
ttcccaggacaggatggtttggctggtcccaagggtgcccctggtgagcgtggcccccct
ggaatttctgggcctaagggtgcgaatggtgatcctggccggcctggtgagcctggtctt
cctggcgcgagaggtctaactggtcgtccaggtgatgctggccctcagggcaaggttggg
ccatctggagctcctggtgaagatggtcgtcctggaccccctggtcctcaaggtgcccgt
ggtcagcctggaataatgggattccctggacccaagggtgccaatggtgaacctggtaag
cctggagagaaaggacttgttggtgctcctggtctacggggtctgcctggtaaagatggt
gaaactggtgctgctggacctcctggacctgctggacctgccggagaaaggggagagcag
ggacagcctggccctccaggtttccagggtttgcctggtcctccggggcctcctggtgag
gggggtaagcctggagatcaaggagttccaggagaggctggtgcttcaggccccactgga
cccagaggtgagcgtggtttcccaggagaaagaggaggtccagggccccagggtctacag
ggaccacgtggtcttcctggaactccaggaactgatggatccaagggagccataggccca
gctggagcccctggggcccagggtccccctggtctgcaaggaatgcctggagagagagga
ccttctggtatacctggaccaaagggtgacagaggagacaatggtgaaaagggacctgag
ggtgctcctggcaaagatggtgcaaggggtttgactggccctattggtcctcctggtcct
gctggtcccaatggagagaagggagaatctggtccggctggaccttctggacctgttggt
gcccgtggtgcccccggtgataggggtgagactggtcctcctggtcctgctggttttgct
ggtcctcctggtgcagatggtcagcctggtgctaaaggagagcagggtgagggtggacaa
aaaggtgatgctggggcccctggaccacaggggccctctggagctccaggtcctcaggga
ccaactggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgctact
ggtttccctggagctgctggcagagttgggccacctggcccaaatggtaaccctggtccc
gcaggtcctgctggtcctcctgggaaagatggtcccaagggtgtgcgtggtgatgctggt
cccccagggagacagggtgatgcaggtctacgtggtccagctggtcctccaggggaaaag
ggagagccaggggaggatggtcctcctggtccagatggaccagcaggtcctcagggcctt
gctggacagcgtggtattgttggtcttcctggacagcgtggtgaaagaggcttccctggc
ctgcctggaccttctggtgagcctggcaagcagggcactcctggtggtcctggagaccgt
ggtcctcctggccctgtgggacctcctggactgactggacctgctggagaacctggtaga
gagggtaaccctggctctgatggtcctcctggccgagatggtgccccaggaatcaagggt
gatcgtggtgccactggtccagctggtgctcctggtgcccctggtgcccctggtgcccct
ggcccggttggccccactggcaaacagggagacagaggagaggctgggccccagggacct
tcgggaccacctggacccgctggagcaaggggaatggctggaccccaaggaccccgtgga
gataaaggagaagctggcgaggcaggagagagaggacagaagggtcatagaggtttcaca
ggacttcagggcctccctgggcctcctggtcagcccggtgaccagggtgctgttggacct
gctggccccggtggagcaagagggccacctggccctgtcggtccagctggaaaggatgga
gctaatggcctgcctggcccaattggacctcctggaccacgtggccgttctggagagact
ggtccagctggtcctcctggtaaccctggaccccctggacctcctggacctcctggccct
ggcatcgacatgtctgcttttgcaggtctatcccatcatgagaaggcccctgatcccctg
aggttcatgagagctgatcaggctgcaggaggtcttcgacagcatgatgcagaggtggat
gccaccctcaagtccctgaataaccaaatcgaaaacattcgcagccctgagggttcaaag
aagaaccctgctcgcacctgcagagacctgaaactatgccacccagactggaaaagtgga
gagtattggattgatcctaaccagggctgcacaattgatgccatcaaggtcttctgcaac
atggaaactggtgagacgtgtatctatcctaaacctgacaaaatcccacgcaagaattgg
tggagtaccaagagcagtgacggcaaacatatctggttcggggagacaatgaatggtgga
ttccatttcacttatggagatgaaaccctttcacctaatacagcgagcatccagatgaca
ttcttaagactgctgtccacagaggcttcacagaacctgacataccactgcaagaatagt
gtggcttacatggaccgggccacaggcaacctgaagaaggctctgattctgcaaggctcc
aatgatgtagagatcaaagctgagggcaacagccggttcagatacaatgtgctagaggat
ggctgtacgagtcacaccgggcagtggggcaagacagtaattgagtacaagtcacagaag
acctctcgtctgcccattgtggacattgcccctatagacattggtggagctgatcaagag
tttggagttgatgttggtgctgtctgctttttataa
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integrated database retrieval system
