Colossoma macropomum (tambaqui): 118800860
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Entry
118800860 CDS
T09004
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a isoform X1
KO
K10802
high mobility group protein B1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03410
Base excision repair
cmao04140
Autophagy - animal
cmao04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118800860 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118800860 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
118800860 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmao03036
]
118800860 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118800860 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118800860 (hmgb1a)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
118800860 (hmgb1a)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
118800860 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
118800860 (hmgb1a)
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
118800860 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
NOA36
Ets
Motif
Other DBs
NCBI-GeneID:
118800860
NCBI-ProteinID:
XP_036416915
LinkDB
All DBs
Position
Unknown
AA seq
209 aa
AA seq
DB search
MRDIFKMGKDPAKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKTMSAK
EKGKFEEMARLDKARYEREMKNYVPPKGEKKKRFKDPNAPKRPPSAFFIFCSEYRPKVKE
ETPGLSIGDVAKKLGEMWNKTSAEEKQPYEKKAAKLKEKYEKDIAAYRKGKVVGGAAKAP
TKPDKADDDDDDDDDEEDDDDEEEEEDDE
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgagggacatcttcaagatggggaaggacccagcaaaaccaagaggaaaaatgtcctct
tatgcctattttgtccagacctgcagagaggaacacaagaagaaacaccctgacacgtcg
gttaacttctcagagttctctaaaaagtgctctgagcgatggaagactatgtcagccaag
gaaaagggcaagtttgaggagatggccagacttgacaaggcacgttacgagagggagatg
aagaactacgttcctcccaaaggcgagaagaagaagaggtttaaggaccccaatgccccc
aagagacccccgtcggcctttttcattttctgttcggaatatcggcccaaggtgaaggag
gagacccctggtctgtctattggagatgtggccaagaagcttggagagatgtggaataag
acctctgctgaagagaagcagccttatgagaagaaggcagccaagctgaaggagaaatat
gagaaggatattgcagcataccgaaagggaaaagttgtggggggtgctgcaaaagcccca
accaagccagacaaagccgatgatgatgatgatgacgatgacgacgaggaagacgatgat
gatgaggaagaggaggaggatgatgagtaa
DBGET
integrated database retrieval system
