Colossoma macropomum (tambaqui): 118801341
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Entry
118801341 CDS
T09004
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118801341 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118801341 (ddx6)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118801341 (ddx6)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118801341 (ddx6)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118801341 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
118801341 (ddx6)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118801341 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
AAA_22
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
118801341
NCBI-ProteinID:
XP_036417491
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQMRGSVKPTGGPQTTQPTQIKASSTINNGNSQPVPTANTVI
KPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEES
IPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRELALQVSQICIQ
VSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLD
EADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLMEELTL
KGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHA
KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSG
RFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESSEEVKL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaacagagaacccagtgattctgggactgtcaaatcaaaatggccaa
atgagaggctctgtcaagccaacaggaggacctcaaacaacacagcccacccagattaaa
gcttccagcacaatcaacaatggcaactcccagcctgtacccacagcaaacaccgtcatt
aaacctggggatgactggaagaagaacttaaaacttcctccaaaggatatgcgaatgaaa
acctctgatgtgactgctaccaaggggaatgaatttgaagattactgcctgaaacgggag
ttgctgatgggcatctttgaaatgggctgggagaaaccgtcacctatccaggaggagagc
attccaattgctttgtctgggagggacattctggctagagccaagaacggcacaggaaag
agtggcgcctacctcattcccttacttgaacgcattgacctgaagaaggactgcatacaa
gcattggtcattgtgcccaccagagaactggctctgcaggtgagccaaatctgcatacag
gtcagcaaacacatgggcggggttaaggtcatggcaaccacaggtggaacaaacctccgt
gatgacatcatgaggcttgatgagacagtgcatgttgttattgcgactcctggaagaatc
ttagatcttatcaaaaaaggagttgctaaagttggacaagtgcaaatgatcgtgttggac
gaggcagataagctcctgtcgcaggactttgtgcagatgatggaggaaattctgagcttc
ttgcccaaacaaaggcaaattctgctgtactctgcaaccttccctctaagtgtacagaag
ttcatgaacgctcatttgcagaagccttatgagattaatcttatggaggagctgaccctg
aagggcgtgacccagtattacgcctatgttactgaaaggcagaaagtccattgccttaat
actcttttctctaggctccagatcaatcagtctataatcttctgcaactcgtctcagcga
gtagagctcctggccaagaagatatcccagcttggttattcctgtttctacattcatgcc
aagatgagacaggaacacaggaaccgtgtgttccatgatttcagaaatggcttgtgcaga
aatcttgtctgcacagatcttttcacaagaggaattgacattcaggctgtgaatgtggtg
atcaactttgatttccccaaactcggggagacgtacctccatcgtattggcagatctggt
cgttttggacacttgggtctggccattaatctgatcacctatgatgaccgctttaacctg
aagggcattgaggagcagctgggtactgagatcaagcccattcctagcagcattgacaag
agcttgtatgtggcggagtatcacagtgagagcagtgaggaggtcaaactgtga
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