Colossoma macropomum (tambaqui): 118801706
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Entry
118801706 CDS
T09004
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03030
DNA replication
cmao03420
Nucleotide excision repair
cmao03430
Mismatch repair
cmao03440
Homologous recombination
cmao03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118801706 (rpa1)
03420 Nucleotide excision repair
118801706 (rpa1)
03430 Mismatch repair
118801706 (rpa1)
03440 Homologous recombination
118801706 (rpa1)
03460 Fanconi anemia pathway
118801706 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmao03000
]
118801706 (rpa1)
03032 DNA replication proteins [BR:
cmao03032
]
118801706 (rpa1)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118801706 (rpa1)
Transcription factors [BR:
cmao03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118801706 (rpa1)
DNA replication proteins [BR:
cmao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118801706 (rpa1)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118801706 (rpa1)
MMR (mismatch excision repair)
118801706 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
118801706 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Telethonin
Motif
Other DBs
NCBI-GeneID:
118801706
NCBI-ProteinID:
XP_036417967
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MSVKLSEGAIEALTKGGNVSNPVLQLVNIRKIDGGSGPVRFRLMMSDGLHTMSSFMLSTQ
LNYLAEQNLVAPNCVCLVKRSVTNVLKDGRPVVIILDMEVVKPADQVGGKIGDPTPYVEG
QSKAPQPAAPAPSARPLQPQNGGDGPMNRGPSRDFGKKPMSAPNTPSGTSKVVPIASLNP
YQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSLIEQG
KVYYISKGSLKIANKQYTSLKNDYEMTLNGESTIIPCDDSQDVPMVQCDFVSIADLEARD
KDAIVDVIGVCKSVEDVTRITTKNSREVSKRNIQLMDMSGKTIQVTMWGKEAETFDGTGQ
PILAIKGARLSDFGGRSLSTLYSSTLLINPDMPEAYKLRGWYDKEGHALDGQSMTEMRGG
GGSGPTNWKTLADVKNEHLGHGDKADYFSCVGTIVYMRKENCLYQACPSKDCNKKVVDQQ
NGMYRCEKCDKEFPDFKYRLMLSANIADFSDNQWVTCFQDSAETLLGQKADYIGQLKDSN
EAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVEAKPVDHKEYSKRLIMNIRKTA
VQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaagctgtcagagggcgcgattgaggccctgaccaaaggtggcaatgtttca
aacccagttcttcagttggttaatattcgaaagattgatggaggcagtggaccagtgcgt
tttcgactcatgatgagcgacggccttcataccatgtcctccttcatgctctccacacag
ctgaactacctggctgaacaaaatctggtagctccaaactgtgtgtgtttggtgaagcgc
agtgtcacaaatgtccttaaggatggacggcctgtggtaattatactggacatggaggtg
gtcaagcctgctgatcaggtgggagggaaaataggagatccaactccttatgtggaaggt
caatctaaggctccacagcctgcagcacctgctccttctgcacgtccacttcagcctcag
aatggaggtgatggccctatgaacagaggccccagtcgtgactttgggaagaagcccatg
agtgcgcccaacacaccatcaggcacctcgaaagttgtgcctattgccagccttaacccc
taccagtcaaaatggacaattcgagcacgtgtcaccaacaagagcgccattcgcacttgg
agcaattctcgaggagatggaaagctcttttccatggagattgtagatgagagcggagag
attagggttactggatttaatcaagaggtggacaaattctactccctcatcgaacagggg
aaggtgtattacatctccaagggcagcctgaagattgctaacaaacagtatacatctttg
aagaatgactatgagatgaccctgaacggtgagtccaccatcatcccctgtgacgacagc
caggacgttcccatggtgcagtgtgactttgtctccattgctgacctggaagctcgggac
aaggatgccatcgtggatgtgattggtgtttgtaagagtgtggaggatgtgactcgtatc
acaactaagaacagtcgtgaggtgtccaagcggaacatccagctgatggacatgtctggc
aaaactatccaggtcaccatgtgggggaaagaggcagagacatttgatggcactgggcaa
cccatcttggccataaagggtgccaggctttctgactttggaggacgctcgctctctaca
ctctacagcagtacactgctgattaaccctgacatgccagaggcatacaagctgcgaggc
tggtatgataaagagggccatgcccttgatggacagtccatgactgagatgaggggaggt
ggaggcagcggtcccaccaactggaagaccctggcagatgtcaaaaatgaacacctgggc
catggagacaaggcagattacttctcttgtgttggcaccattgtgtatatgaggaaggag
aactgtctataccaggcctgtcctagcaaagactgcaacaagaaggtggtggaccagcag
aatggcatgtaccgctgtgagaagtgcgacaaagagtttcctgacttcaaatatcgtctc
atgctctctgcaaatattgcagattttagtgacaaccagtgggtgacatgctttcaagac
agtgctgaaaccctcttgggccagaaagcagattatattggccaactcaaggactcgaat
gaggctgcgtttgacgaggtcttccagcatgccaacttcaacacttttgtcttccgaaat
cgggtgaagttggagacctacaacgatgaatctcgcattaaggtgactgtggtggaggct
aaacctgtggaccacaaagagtatagcaagaggctcatcatgaacatcaggaagactgca
gtgcagtag
DBGET
integrated database retrieval system
