Colossoma macropomum (tambaqui): 118803264
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Entry
118803264 CDS
T09004
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118803264 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118803264 (prpf8)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118803264 (prpf8)
Complex C
U5 SnRNP specific factors
118803264 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
118803264
NCBI-ProteinID:
XP_036419730
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPAGMPPGIPPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVAEWFYEHQPLKDTTKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
TTEAAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQG
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctacattcccctacagaggtgtccctgcagggatgcccccgggtattcctcct
cctgcacaggtgccagactacatgtctgaggagaagttgcaagaaaaagcacgaaaatgg
caacagctgcaggcgaaacgttactcagagaagaggaaatttggttttgttgatgctcag
aaagaggacatgccgcctgagcatgttcgcaaaattatcagggaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtttaccttggggctctgaaatacatgcctcat
gcagtgcttaaactgctggagaacatgcccatgccctgggagcagatcagagatgtacca
gtgctctaccacattacaggagccatttcctttgtcaatgaaatcccctgggtcattgag
ccagtttatatcgcacagtggggtactatgtggatcatgatgcgtcgtgagaaaagagac
agacgacacttcaaacgtatgcgtttccctccctttgatgacgaagagcctccattggac
tatgcagataacattctggatgtggagcctcttgaggccattcagatggagctggaccct
gaggaggacagctctgtggcagaatggttttacgagcatcagccgctgaaggataccaca
aagtatgtcaatgggactacatacagacgttggcaattcactttgccgatgatgtccacg
ctttatcggttggccaatcagctgctgactgatttggtggatcgtaactacttctatttg
tttgacctgaaggctttcttcacctcaaaggccctgaatatggccattcctggaggacct
aaatttgaacccctggtcagagacatcaatctacaggatgaagactggaatgaattcaat
gacatcaacaaaatcataatcagacagcccattaggacagagtacaagattgctttccct
tacttgtacaacaatcttccacatcatgtccacctcacttggtaccacactcctaatgtg
gtgtttatcaagacagaggatcctgatctgcctgccttctactttgatccgctcatcaat
cccatctctcacagacactcagttaaaagtcaagagccactgcctgatgatgatgaggag
tttgaacttcctgagtatgtagagcccttcctcaaggagacgcctctgtatacagacaac
acagccaatggaattgcccttctctgggccccacgtccattcaacttgcgctctggaaga
acccgtcgtgccattgatgttcctctcatcaagaactggtatcgggagcactgtcctgca
ggtcagcctgtcaaagtacgtgtgtcttatcagaagctcttgaagtactatgttctcaat
gctctgaaacacagaccacctaaagcacagaagaagaggtaccttttccgttcatttaag
gccacaaagttcttccagtccacaaagctggactgggtggaggtgggcctccaggtgtgt
cgacagggttacaacatgctgaacctgctgattcacagaaagaatctcaactacttgcat
ttggattacaatttcaatctgaagcctgtcaaaaccctcaccacaaaggagcgtaagaag
tcccgatttgggaatgcgttccacttgtgccgtgaggttctccgtctgagcaaactggta
gtggacagccatgtgcagtacagattgggaaatgttgatgcgttccagttggcagatggg
ttgcagtacatctttgcccatgtgggtcagctgactggcatgtatcgctacaagtacaaa
ctgatgaggcagatcagaatgtgcaaggacttgaagcatctcatctactaccgcttcaac
acaggtccagttgggaaaggtccaggttgtggcttttgggctccgggatggagagtgtgg
ctgttcttcatgaggggcatcactcctctgttggaaagatggcttggtaacctgctagcc
aggcagtttgaaggacgtcactccaagggagttgcaaagactgtgaccaagcagcgtgtg
gagtctcactttgatctggagctgagagcagctgtgatgcatgacatcctggacatgatg
cccgagggcatcaaacagaacaaggcgaggaccatcctgcagcacctcagcgagtcctgg
agatgctggaaagctaacattccctggaaggtcccaggtcttcccacaccaattgagaac
atgattttgcgctatgtgaaagccaaagctgactggtggactaacacagcccattacaac
cgagagcgaatcaggcgaggagctaccgtggacaagactgtctgcaagaaaaaccttggt
cgtctcacacgactctacctgaaggctgagcaggagagacagcacaactacttgaaggat
ggtccatacatcacagcagaagaggcagtggccatctacactactactgtgcattggctg
gagagccggcgcttctctccaattcccttccctcctctctcctacaaacatgataccaag
ctgctaatcctagctctggagagactcaaagaggcctacagtgtgaagtcgaggttgaat
cagtctcagcgtgaggagttgggcctgattgagcaggcatacgacaaccctcacgaggct
ctgtccaggatcaagcgtcacctcctcacccagagagctttcaaagaggtgggcattgag
ttcatggacctgtacagtcacttggtacctgtgtatgatgtggagcctcttgagaagatc
actgatgcttacctggatcagtacttgtggtacgaggctgacaagcgcaggctcttccca
ccctggatcaaaccagcagacacagagccacctccattgctggtttacaagtggtgccaa
ggaatcaacaacctacaggatgtgtgggaaaccacagagggcgagtgcaatgtcatgctg
gagtcacgctacgagaagatgtatgaaaagattgacttgacactgctcaacaggctgctg
cgtctcattgttgatcacaacattgctgattacatgacagccaagaacaacgttgttatt
aactacaaggacatgaaccacaccaactcgtatggcatcatccgtggcctgcagtttgct
tccttcattgtgcagtactatgggctggtgatggacctgcttgttctgggtcttcaccgt
gccagtgagatggcaggacctccccagatgcccaacgacttcctcagcttccaggacagt
actacagaggctgctcatcccattcgcctgtactgcagatacattgaccgcatccacatg
ttcttcaggttttctgctgatgaggcaagggatctgatccagcggtaccttacagagcac
ccagatcccaacaatgagaacattgtgggctacaacaacaagaagtgctggcctagagat
gccaggatgaggctgatgaagcatgatgttaacctgggccgcgctgtattttgggacata
aagaatcggcttcctcgctctgtgaccactgtgcagtgggagaacagctttgtttcagtt
tacagcaaagacaaccccaacctacttttcaacatgtgcggcttcgagtgccgtatcctg
cccaagtgccgcacaagttatgaggagttcacacacaaggatggtgtgtggaacctgcag
aatgaagtaaccaaggaaaggacagctcagtgcttcctgcgagtggatgatgaatccatg
cagaggttccataacagagtacgacagattctgatggcttcagggtctaccactttcacc
aagattgtgaacaaatggaacacggctttgattggtctgatgacctacttccgtgaggct
gtggtcaacactcaggagctgctggacctcctggtgaagtgtgagaataagatccagact
cgtatcaagattggtctgaactccaaaatgcctagtcgtttcccacctgtggtcttttac
accccaaaggagttgggtggtctgggcatgttgtccatgggccatgtgctcatcccacag
tctgatctgaggtggtccaaacaaacagatgtgggcatcactcatttccgctctggtatg
agtcatgaggaggatcagctgattcccaatctttatcgctatatccagccatgggagagt
gagttcattgattctcagagagtgtgggctgaatatgccctcaagagacaggaggccatt
gcccagaacagacgcctgactcttgaggatttggaggattcttgggacagaggtattcct
cgtatcaacacactgttccagaaagacagacatacactggcctatgacaagggctggaga
gtcagaacagacttcaaacagtaccaggtgctaaagcaaaatccgttctggtggactcac
cagagacacgacggaaaactgtggaatctgaacaattaccgcacagacatgatacaggct
ttgggaggagtggagggaattttggagcacactctcttcaagggaacgtacttccccacc
tgggaaggtctcttttgggaaaaggccagtggttttgaggagtccatgaaatggaaaaag
ctgaccaatgctcagagatctggtctgaatcagatccccaatcgacgattcactctgtgg
tggtctcccactatcaacagggctaatgtatacgtgggtttccaggtgcaattggatctc
acaggaatcttcatgcatggcaaaattccaaccctcaagatctccttgatccagattttc
agggctcacttgtggcaaaagattcatgagagcattgtcatggatctgtgtcaggtgttt
gaccaggaactggatgctctggagattgagactgtacaaaaggaaaccatccatcctaga
aagtcctacaagatgaactcttcctgtgcagacattctgctgttcgcctcctacaaatgg
aatgtttcaaggccatcgctgctcgctgactcaaaggatgtgatggacagcaccaccact
cagaaatactggattgacatccagctcagatggggagactatgactctcatgacattgag
agatatgccagagccaagttcctggactacaccacagataacatgagtatctacccatcc
cccactggtgtgctgattgccattgatctggcctacaatctgcacagtgcctatggcaac
tggttccctggcagcaagcctctgatccagcaggccatggctaaaataatgaaggccaat
cctgccctgtatgtgctgagggagcgtatccgcaaaggtctgcagctttactcctctgag
cccactgagccctacctgtcctcccagaactatggagagcttttctccaaccagatcatc
tggtttgtggatgacaccaatgtgtaccgtgtcactatccacaagacctttgagggcaac
ttgaccacaaaaccaatcaatggagccatttttatcttcaatccaagaactggacagctc
ttcctaaagatcattcacacatctgtgtgggctggacagaaacgtctgggacagctggcc
aagtggaagactgctgaggaagtggctgctctcattcgatcactgcctgttgaagagcag
cccaagcagatcattgtcaccaggaagggcatgttggatcctcttgaggtgcacttgttg
gatttccctaacattgtgatcaagggatctgagctacagctccccttccaggcctgtctg
aaggtagagaagtttggagacctcattctgaaggccactgagcctcaaatggtcctgttc
aatctgtatgatgactggctgaagacaatttcttcttacactgccttctcacgtctcatc
ttgatcctgagggccctgcatgtgaacaatgaccgtgcaaaggtgatcctgaagccggac
aaaaccaccatcactgagccacaccatatctggcccactctcactgatgaagagtggatc
aaggtggaggtgcagctcaaagatctcatcttggctgactatggcaagaagaacaacgtg
aatgtggcttctctgacacagtctgagatcagggacatcatcctgggtatggagatctct
gctccctcccagcagagacagcagattgctgagattgagaagcagaccaaagaacagtct
cagttaacagcaacccagacacgcactgttaacaaacatggtgacgagatcatcacttcc
acaaccagcaactatgagacacaaaccttctcctccaaaactgaatggagagtcagggcc
atctctgctgccaacttgcacttacgaaccaaccacatctatgtgtcatcggatgacata
aaagaaactggatacacttatattctacccaaaaatgtgctgaagaagttcatctgcatc
tctgacttgcgtgcccaaattgcaggctatctgtatggcactagtcctccagataaccca
caagtgaaggagattcgctgcattgtgatggtaccacagtggggcactcaccagactgtt
cacctgcccaatcagctgccacagcatgaatatctcaaggaaatggagccacttggctgg
atccacacccaacccaatgaatcccctcagctttctcctcaggatgtcaccacacatgcc
aaggtcatggcagacaacccatcctgggatggagagaaaactattatcataacctgcagt
ttcacaccaggatcctgtacactgactgcttacaagctgactcctagtggatatgagtgg
ggcaggcagaacacagacaagggcaacaaccctaagggttatctgccatcccactatgag
agggtgcagatgctgctgtctgatcgcttccttggattcttcatggtacctggccaaggc
tcctggaactacaacttcatgggtgttcgtcatgaccctaacatgaagtatgacttgcag
ctgtccaaccctaaagagttctaccacgaggttcacaggccctctcacttcctcaacttt
gcctctctgcaggagggcgagatctacaacgccgaccgtgaggatatgtacgcttag
DBGET
integrated database retrieval system
