KEGG   Colossoma macropomum (tambaqui): 118805235
Entry
118805235         CDS       T09004                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03013  Nucleocytoplasmic transport
cmao04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    118805235 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    118805235 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmao03019]
    118805235 (seh1l)
   04131 Membrane trafficking [BR:cmao04131]
    118805235 (seh1l)
Messenger RNA biogenesis [BR:cmao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     118805235 (seh1l)
Membrane trafficking [BR:cmao04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    118805235 (seh1l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EIPR1 EIF3I ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 118805235
NCBI-ProteinID: XP_036421801
LinkDB
Position
Unknown
AA seq 416 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLVLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MIAVGSDDNNVTYSGKVQIYEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLIPLRRESATSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDG
CVRLWKANYMDNWKCTGILRGDGSPVNGSSGQGTALNAVGSAGAQSQNSVVGAASAGRYF
FPHLDPPRAGSRLALLLPPPSLIEQTCESDHTHTHQPPQIRRRYTPAPPTQPTEHD
NT seq 1251 nt   +upstreamnt  +downstreamnt
atgtttgtggcccggagtatcgctgcggatcataaagatctgattcacgacgtttcctat
gatttccacgggcggcggatggcgacctgctccagcgaccagagcgtcaaggtttgggac
aaaagtgacaacggagagtggcactgcacagccagctggaagactcacagtggctcggtg
tggagggtgacgtgggctcaccctgagttcggacaggtcctggcgtcctgctctttcgac
cgcaccgccgcagtgtgggaggaaatagtcggcgaatccaacgacaaacagcgtgggctc
agtcactggataaagagaaccactctggtggacagcaggacatcggtgacggatgtgaag
ttcgccccgaagcacatgggcctggttctggccacctgctctgcggacggagtggtgcgc
atttacgaagccccggacgtgatgaacctcagccagtggagtcttcagcacgagatctcc
tgcaaactctcctgttcctgcatctcctggaacccctccagctcccgtgctcatcctcct
atgatcgctgttggtagtgacgacaataacgtgacgtacagcggaaaagtacaaatctac
gaatacaatgaaaacaccaggaagtacgcaaaagcagaaacgctaatgactgttacggat
cctgttcacgacatcgccttcgctccgaatctcgggaggtctttccacgttctcgccata
gcaaccaaagatgtccgcattttcaagcttataccactccggagagaaagtgccaccagc
tccggccccactaagtttgaggttcaggtgatggcccagtttgacagccacaactcgcag
gtgtggcgcgttagttggaacatcaccagcaccttgctggcctcctccggagacgacggc
tgtgttcgcctgtggaaggctaactacatggataactggaagtgtacagggatcctgcgc
ggtgatggaagcccagtgaacggctcctcgggtcagggaacggccctgaacgctgtgggg
tcggccggagctcagagtcagaacagcgtggttggggcagcgtcggctggcagatatttc
ttcccgcacttggacccgcctcgagccggatccagactggccctcctgctcccccctccc
tccctcatcgagcagacctgcgagagtgatcacacacatacacaccaaccgccgcagata
cgccgccgatacacacccgctccccctacacagcccacagaacatgactga

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