Colossoma macropomum (tambaqui): 118805314
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Entry
118805314 CDS
T09004
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118805314 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118805314 (prpf40a)
Spliceosome [BR:
cmao03041
]
Complex A
U1 snRNP components
U1 related factors
118805314 (prpf40a)
Complex B
118805314 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
DUF4936
Motif
Other DBs
NCBI-GeneID:
118805314
NCBI-ProteinID:
XP_036421930
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MSSADGNNGPSQAPPFPGVPPSGMPPPFMGPPGMPPHFPPMGMPPMAQRPPNMAPMPPGM
MPPMMPPMGGPPIAQMPGMMPPMMPGMMMPPRMPAATMQPTGPPGVSPVDNAAAPGTTST
AANDSSPDDQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKE
YKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGNADVVAPGTAPTLASQTDSAV
AMAAVAEADAAMATAAAAAAAAAAAAAAAAAAEEQLSQMPVQGAEVSSDAVMTSTDDAPS
TETPASNDTSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDP
RYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKA
EQMFGDLEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTY
RTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRTLEKEEEEEKQKGLLRERRR
QRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTISADIRFASMLGQPGSTPLDLFKFYVE
DLKARYHDEKRIIKDILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLE
KAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPDASWEGVRERFLKEPAFEDITLE
SERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKTKKK
RSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSASPESDGEKDRKVRDKDKDKEND
KSRGKTRGESKQKSPKRKPAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgctgatggtaataatggcccaagccaagcaccaccttttcctggtgtccca
ccctcagggatgcccccgccttttatgggaccgccaggaatgccgcctcatttccctccg
atgggaatgccacccatggcccaaaggccgcctaacatggctcctatgcccccagggatg
atgccacccatgatgcccccgatgggaggtcctcctatcgcccagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccaccgcgtatgccagctgcaacgatgcaacca
acaggaccgcctggtgtcagccctgtggataatgctgctgcaccaggaactactagcaca
gcagcaaatgattcttccccagatgatcagccaaaaaagaaatcagtgtggacagagcat
aaatctctggatgggaaaacctattactacaacactgagaccaagcaatctacctgggaa
aaaccggatgaactcaaatcacctgcagagcaaatgctgtctaaatgcccgtggaaagag
tacaagtctgacactgggaagccatattactacaattctcagactaaagagtcccgctgg
acaaagcctaaagagctagaggatttggaagcaatgataaaagcagaggaaaatgggaac
gcggacgttgtagctcctggcaccgccccaactctcgcatctcagacagactcggcggtc
gctatggctgctgtcgccgaggccgatgctgccatggcaacagctgctgctgctgccgct
gctgctgctgctgctgccgctgctgctgctgctgctgaagaacagctgtctcagatgccc
gtgcagggggctgaggtcagcagtgatgctgtcatgacttcaactgatgacgcgcccagc
actgagacaccagccagtaacgacacatctaaagaagagaggccggaactggtgaagaaa
gtatacaagtggaacaccaaagaggaggcgaagcaggccttcaaagaactgctcaaggag
aagggtgtctcctcgaatgcatcttgggagcaagctatgaagatgatcattaacgaccct
cgctatagtgccctgcccaagctgagtgagaagaaacaggcctttaatgcttacaaggtt
cagacagagaaagaagagaaagaggaggccaggatcaaatacaaagagtccaaagagacg
ttccagcgtttcctggagaaccatgagaaaatgacctccactaccagatacaagaaagca
gagcagatgtttggggatctggaggtgtggagctgtgttccagagcgagacagactggag
atctatgaagatgtgctcttctacttggccaagaaggagaaggaacaagccaagcagctg
aggaagcgaaactgggaggcactaaagaatattttggataacatggccaatgtcacgtac
cgcaccacctggtctgaggctcagcagtaccttctggacaatcctacctttgctgaggat
gaagagcttcagaacatggataaggaggatgctctaatctgttttgaggagcacattcga
accctggagaaagaagaggaagaggaaaaacagaagggtctgctgagagagagacgaaga
cagcgtaaaaacagagaggccttccagaaatttctggatgagctgcacgatcatggacag
ctgcactctatgtcagcatggatggagatgtatccaaccattagtgcagacatacgcttc
gccagtatgctaggacaaccaggctctacacctctggacttgttcaaattctatgtggaa
gatctgaaagcgcgataccatgatgagaagagaatcatcaaagacatcttaaaggataag
ggcttcctggtggagatcagcacgagctttgaggattttggctcagtgatcagttcagat
aagagagccaccacactggatgcaggcaacatcaaactagccttcaacagtttactggaa
aaggcagaggcacgagagagggagagagaaaaggaggaggccaggaagatgaagaggaaa
gaggcagccttcaagagcatgctcaaacaggccacaccccctctggagcctgatgcttca
tgggaaggggtgagggagagattcctgaaggaacctgccttcgaggacattaccttggag
tctgagagaaaaaggatattcaaagattttatgcatgttttggagcatgagtgccagcat
catcactctaaaaccaagaaacactccaagaaatccaagaagcaccacagaaaaagatcc
cgttctcgctcaggatctgaatctgaggacgatgagtatcactcaaaaacgaagaagaag
cgttcaacttcaaaatctccgtctgagcattcttcctcaggagaatccgagagaagttac
aaaaaatccaagaaacacaagaaaaagggaaagaagagacgacacaagtcggcttcaccc
gaatccgatggagagaaggaccgaaaggtacgagataaggacaaggataaagagaatgat
aagtctagagggaaaactcgtggtgaatctaaacagaaatctcccaagaggaaaccagct
aaagaagagggaggatgggacacctcaggcagtgaactgagtgaaggagagctagagaag
aggagaagaactcttctggaacagttagatgctccatag
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