Colossoma macropomum (tambaqui): 118805410
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Entry
118805410 CDS
T09004
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
cmao03015
mRNA surveillance pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118805410 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
118805410 (ddx39b)
03015 mRNA surveillance pathway
118805410 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118805410 (ddx39b)
03041 Spliceosome [BR:
cmao03041
]
118805410 (ddx39b)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118805410 (ddx39b)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118805410 (ddx39b)
Spliceosome [BR:
cmao03041
]
Complex C
Other components
EJC/TREX
118805410 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118805410 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
118805410
NCBI-ProteinID:
XP_036422072
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAAGGVGDGGLTGDSGAMAIRKEGVKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAVFFGGLSIKKDEEVLKRESPHVVVGT
PGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQDRFEVNIS
ELPEEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggagaacgagctgttagactatgaggaggatgaggtggacgca
gcaggtggtgtcggggatggagggctcaccggggacagtggcgcgatggccataagaaag
gagggggtcaaagggtcctatgtgtccatccactcttcaggattcagagacttcctttta
aagcctgagcttctgagggccattgtggactgtggctttgagcatccgtctgaggtccaa
catgagtgcattcctcaagccattctggggatggatgtgttgtgccaggccaagtctggt
atggggaagacggccgtatttgtgttagctacgctacagcaattagagccagtgaccggg
caggtatcagtgctggtgatgtgtcatacccgagagctggcgttccagattagcaaagag
tacgagcgcttttccaagtacatgcctgctgtcaaggtggcagtgttctttggcggtttg
tctataaagaaggatgaggaggtgttgaagagagagagccctcatgtggttgtgggaact
cccggccgtatcctggccctgtcccgcaacaagagcctcaacctgcgccacatcaaacat
ttcatcctggacgagtgcgacaagatgctggaacaacttgacatgcgccgtgacgtccag
gagattttccgcatgaccccccacgagaagcaagtcatgatgttcagcgccaccctgagc
aaagaaatccggcccgtctgccgaaagttcatgcaagatccgatggaaatatttgtggat
gatgagaccaagctgacactgcatggcctgcagcagtactatgtcaagctgaaggacaac
gagaagaaccggaaactctttgatcttctggacgtgctggagttcaaccaggtggtgatc
tttgtgaagtcagtgcagcgctgcattgcccttgctcagctgctggtggaacagaatttt
cctgccatcgctattcacagagcaatgccccaggaggaaaggctagctcgatatcaacag
tttaaggactttcagaggcggatccttgtagccactaacctgttcggaaggggaatggac
atcgaaagggtcaacatcgccttcaactatgacatgcccgaggattctgacacatacctg
cacagggtggcaagagcaggccgctttgggacgaaaggtttggccatcacgtttgtgtct
gatgaaaacgatgcccgtacgctgaatgatgttcaggacaggtttgaggtgaacatcagt
gaacttccagaggagatcgacatctcctcctacattgagcagacgcggtaa
DBGET
integrated database retrieval system
