Colossoma macropomum (tambaqui): 118805834
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Entry
118805834 CDS
T09004
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118805834 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118805834 (smarcc1b)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118805834 (smarcc1b)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118805834 (smarcc1b)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118805834 (smarcc1b)
PBAF complex
118805834 (smarcc1b)
GBAF(ncBAF) complex
118805834 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
118805834
NCBI-ProteinID:
XP_036422830
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MATQTPGAAQSGAGGSSAFSRKKDGDPCCKFWESVETVAQLETVRSWIGKHYKKYVQTDA
PSGKSLSGLIIQLLQFQEDAFGRRASNPGLTKLPAKCFLDMKPAGALCHILGSAYKFKTE
QGWRRFDMQNPSRFDRNIEMFVSVEKTLLQNNLLSRPVVYLSPEIEQKQASKLNDIITRH
QGSVTEDKLQATHQIYPFPILADEEEWLRPIMRVDQDVMVHWGMYPDSYDTLMSVSDIDA
DVEEAPSLDRPWKVHAKWVLDTDTYNEWMNEEDYEVDDSKRSMSYRRRIYPRDEEEHKVS
GKKRRRSPSPSSSESRKKGGKKGSGLYKRRGQQEEEPEEDLTKDMEDPTPVPNMEEVMLP
KNVNMKKDSENTPVKGGTMADLDDQEDEFLSGVRDEEDQGREFGRALDCEESATEQTHHI
IIPSYTSWFDYNCIHRIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLTST
SCRRNLTGDVCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDSPSALVPL
QHRPLQVPASQHMLHFPEKSREKPSDLQNFGLRTDIYAKKHPKTKGANAGREWTEQETLL
LLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASLGPLAYQPVPFSQ
SGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEAPPELFNPNIRKVQEPGRSLAR
LDPAFGMQSSNISGSESDQLEKSDGSGMEKMEFESEQHDKTVGENITGEGERVKNEERDE
SEGEKGEENTAEEALEVDQTQGEEEDRGRRKELELVEANIATAAAAALASAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHMEQ
VKYAELKARQHLEQQQQQQQPGASQSGGTVYNPVHHGRAIGSGGAGQMIGSRHAGAPNGM
YPTPPSSQSEGATPISRAPVES
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcaaaccccgggagcagcacagagcggggcgggcggcagctccgctttcagc
cggaaaaaagatggggatccatgttgtaagttctgggagagtgtggagacggtggcgcag
ctggaaacggtccgcagctggattggaaaacattacaaaaagtatgtgcagactgatgct
ccttctggtaagtctctctcagggctgattatccagcttctacagtttcaggaggatgct
tttggccgcagagcaagcaaccctggcctcacaaaactgccggcaaagtgctttttggac
atgaagcctgctggtgctctttgtcacatccttggctccgcatataaatttaagacagag
caaggctggcgccgctttgacatgcagaatccatcccgatttgaccgcaacatagaaatg
ttcgtcagtgtggagaaaaccctgttacagaataacctgctgagcagacctgtggtgtat
ctgtcccctgagatagaacagaaacaggccagcaaactcaacgacatcatcacacgtcat
cagggttcagtcacggaagataagttacaggccacccatcaaatctacccctttcccatc
ttagctgatgaagaagagtggcttagacccatcatgcgggtagatcaagatgtgatggta
cactggggcatgtacccagatagttatgatacattgatgtcagtcagtgatattgatgca
gatgtagaggaagcccccagtctagatcggccatggaaggtacatgctaaatgggttctt
gacacggacacatataatgagtggatgaacgaggaagactatgaggtggatgacagtaaa
aggagtatgagctaccgacggcgcatttacccacgagatgaggaggagcacaaggtgtct
gggaagaagaggaggcgctccccttctccatcttcatctgagtccaggaagaaaggagga
aagaaaggttcagggttgtataagaggcgtggccagcaggaggaggagccagaggaggac
ttgacaaaagacatggaggacccaacacctgtgcctaacatggaagaggtcatgctgcct
aaaaatgtaaacatgaagaaggacagtgagaacacaccagtgaaaggggggaccatggct
gacttagacgatcaggaggatgaattcctatctggtgtcagggatgaggaggatcagggt
agagagtttggccgtgcgttggattgtgaggagagtgctacagagcagactcaccacatc
atcatacccagctacacctcgtggttcgactacaactgtattcatcgaatagagaggaga
gcactgcctgagttcttcaatgggaagaacaagtccaaatcacctgagatatatctggcg
tatcgtaacttcatgattgacacataccgactgaaccctcaagaatacctgacctccact
tcctgcaggcgcaaccttacaggagatgtgtgtgcccttataagggttcatgcgttcctg
gagcagtggggtttgataaactaccaggtggatgctgagagcagacctcttcctatgggc
ccacccccaacaccacactttaatgttcttacagactcaccgtccgccctcgttcctcta
caacacagaccgttacaggttccagcctctcagcatatgctccattttccagagaagagc
agagaaaaaccttctgacttgcagaattttggactgcgaaccgatatttatgcaaagaaa
catcccaagacgaaaggagcaaatgcagggcgagagtggacagaacaggagacgctgttg
ctcttggaggcgttagagatgtataaagatgactggaataaagtctctgagcatgtgggc
agccgcacacaggatgagtgtatcctgcacttcttgcggttgcccatagaggacccttac
ctggagaactctgaagcctctttgggccctctagcctatcagcctgttccctttagccaa
tcaggcaaccctgtcatgagcactgtggccttcctcgcttcagtagtggaccccagagtg
gcctctgccgctgctaaagcagccctggaggagttctctcgagtgagagaggaagcccct
ccagagctgttcaaccccaacatccgtaaagtccaagagcctgggaggagtctagcacga
cttgatcctgcttttgggatgcagtcaagtaacatctcaggatctgaatctgatcaactg
gaaaagagtgatggatccggaatggaaaaaatggaatttgagtctgaacagcatgacaag
actgtgggagaaaacatcacaggagagggagagcgagtgaagaatgaggaaagagatgag
agtgaaggagaaaaaggagaggagaacacagcagaagaagcgttggaggtggaccagact
caaggagaagaggaagacagaggaaggaggaaggagcttgagttggttgaagcaaatatt
gctacagctgctgctgctgcgttggcctctgcagccaccaaagccaaacatttggctgca
gttgaggagagaaagattaagtctctggtggctttgctggttgagactcaaatgaagaag
ctggagatcaaactgaggcactttgaggagctggaaaccatcatggaccgagaaaaagag
gcgctggagcagcagaggcagcaattgctgtcagagaggcagaacttccacatggagcag
gtgaagtatgctgagctaaaagctcgacagcacctggagcagcagcagcaacagcagcag
cctggagcctcacagagtggtggaacggtgtataaccctgtacatcatggtcgtgcaatt
ggcagtggaggagcagggcaaatgataggttcccgacatgccggtgcccctaacggcatg
tacccaactccaccttcctcacaatctgaaggggccacacccatctcccgagctccagtg
gagagctga
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integrated database retrieval system
