Colossoma macropomum (tambaqui): 118806131
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Entry
118806131 CDS
T09004
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118806131 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118806131 (xab2)
03041 Spliceosome [BR:
cmao03041
]
118806131 (xab2)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118806131 (xab2)
Spliceosome [BR:
cmao03041
]
Complex B
Other components
Prp19-related factors
118806131 (xab2)
Complex C
118806131 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_19
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
SNAP
TPR_1
NRDE-2
PPR
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
118806131
NCBI-ProteinID:
XP_036423389
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPTFNGKPDVTFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNGPKSVLNMVYERALKELP
GSYKLWYNYLRERRKQVKGRCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQRK
ISRSRRTFDRALRALPITQHTRIWPLYLQFARNLPLPETAIRVYRRYLKLCPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVSSLNVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGHDEDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDAMKATGKPHSLWVAFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERLQMFNIYIKRAAEIYGVTHTRAIYQKAIEILPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGTISDLAPGQSGIDDMKMLEQKAQQLAVEAEQ
DKPKPKDKILFVRSDASRSELGELAKQANPDEIDIDDDEEDEDGDDEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccgacttttaatggaaagccagatgttacatttgaggaagatgacctgccttacgaa
gaggaaatcatcagaaacccatactcagtcaagtgctggatgcgctatatcgagcataaa
caaaacggtccaaagtcggtgcttaatatggtttatgaacgagcactgaaggagctacct
ggcagttacaagttgtggtacaactatctgagagagcggaggaagcaagtaaagggaaga
tgcgtgacagatccagcctatgaggaggtcaacaactgccacgagagagcgctggtgttt
atgcacaagatgccaaggatatggctggattactgtcagttcattgtgtctcagcgcaaa
atctcaaggagccgtcgcacatttgaccgggcgctcagagccctgcccattacccagcac
actagaatctggcccctctaccttcagtttgcacgaaacttacccttacctgagaccgcc
atccgtgtttaccgtagatacctcaagctttgtccagagaacgcagaggaatacatcgat
tacctgcgttctgtaggacgcctggatgaggcagcagtgcgactagccgctgtggtcaac
gatgaaagctttgtctcaaaagaagggaagtcaaactaccagctgtggcacgagctgtgt
gacctcatctctcagaatccagacaaggtgtcctcgctgaatgtgggtgccatcatacga
ggtggcctcactcgtttcacagatcagctgggcaagctctggtgctctatggctgattac
tacatccgcagcggtcattttgaaaaggcacgtgatgtgtacgaggaggctatccagaca
gtagtcactgtaagagacttcactcaagtgttcgacagctatgcccagtttgaggagagc
atgatcgctgctaagatggagaccacatccgagatgggacatgacgaagacgatgatatt
gatctggagttgcgcttggctcggtttgagcagctgatcacccgccggccgctcttactg
aacagcgtgctgctccgacagaacccgcacaatgttcacgagtggcacaagagagtcaaa
ctgtacgaaggcaatcctcgacagataatcaacacctacactgaggctgtgcagacagtg
gatgccatgaaagcgacagggaagcctcactccctctgggtagcatttgccagattctac
gaagataatgaacagctggatgatgccaggacgatctttgagaaggccaccaaggtgaac
tataaacaggtagatgatctggcagcagtgtggtgtgaatatggggagatggaattacgg
catgagaactacgaccaggcgctacggatactcaggaaagccacagctatcccagcaaga
aaagcagagtactttgattcatcagaaccagtgcagaatcgagtgtataagtcgctgaag
gtgtggtccatgctggctgatttggaagagagtcttggcactttccagtcaacaaaggcg
gtgtatgaccgcattattgatctccgtatagccacaccacagatcatcattaattatgca
atgtttcttgaggaacacaattactttgaggaaagcttcaaggcatatgaacgtggcatt
gcactcttcaggtggcccaacgtatatgacatctggaacacatatctcaccaagttcatc
gatcgttatggcggcaaaaagctggaaagagcacgagatctgtttgagcaggctttggat
ggttgccctgcgaagtttgccaaaacgatctacctgctgtatgccaagctggaggaagag
tacgggctagccaggcacgccatggctgtgtatgagagagccacgcaggctgtggagaca
gaagagcgccttcaaatgttcaacatctacataaaaagagctgcagaaatctatggcgtc
acccacaccagagctatctaccagaaagcaattgagatcctcccagatgagcatgccagg
gacatgtgtctacgatttgctgatatggagagcaaactgggcgagattgatcgggccaga
gccatctattcctactgctcccagatgtgtgatccaaggatgacggcaaatttctggcag
acgtggaaggaatttgagattcgccatgggaacgaagacaccattcgtgagatgcttcgg
ataaagcgcagtgtccaagcgacctacaacactcaggtcaacttcatgtcctcacagatg
ctcaaagcaaccaccagcgctacaggcacaatatcagaccttgccccaggccagagtggc
attgacgacatgaagatgttggagcagaaggcacagcagttagctgtggaagctgagcag
gacaaacctaaacccaaagacaagatactgtttgtcaggagtgatgcttctcggagcgaa
ctaggtgaactggccaaacaagccaacccagatgagattgacattgatgatgatgaggag
gatgaagatggagatgatgaaccagatgaggtgcagctagagcagaagagcgtccccact
gccgtctttggaggactgaaggatgactga
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integrated database retrieval system
