Colossoma macropomum (tambaqui): 118806767
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Entry
118806767 CDS
T09004
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118806767 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118806767 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118806767 (si:dkey-219c3.2)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118806767 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
118806767 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
118806767 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
SAGA-Tad1
DUF5677
Saf4_Yju2
Motif
Other DBs
NCBI-GeneID:
118806767
NCBI-ProteinID:
XP_036424203
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MAGVPDPLEDMLYSDVDEKAVSDLVGSLESQLGGPDESAAPQGDGRRSGPPQAHNPNLGQ
SQPAQAADRRRSGLQRAEPKLEVGGARENGSEGIPASVNAAPSSVLVGAAAAASRLQPLG
KAKPAVGLLTSANCSSDAAVVAPSSSSPSPPTDSLPHTNHISSAIRTVSSRVLPSESGSS
GTVTVNSPAVASAPTAGAGVQTSVSAGATGAVGATGSGLGNENGNMASSNGTNGPLVSAQ
PDHMLSQPADPSGSQAAPAVALHRPPNVLPNGSDPKVAALPAQGVSAAAVPASTVAFSNA
NPSLVKASPQAQIKTIVPNQLAGSPVGLHPSPPAPVTVPASSMQANASLPVASTPSVLVK
PEGGLVGQPTGLLRPGTAAPVVATTAVPQRPGVPVAPRAVVPQITVRPQQQTTIQLPPGF
TIPQGMVLVRTEAGQLVLVPQQVLAQAKAQNQNKPALSPRPATPTTAATFRVTTPVAQPA
VTSPTIRPIPPAQMKVVQTASPASPALQKSPVVTVSSAQKPAGPTVITAGARVQTPPQNL
LKPSPPVPASTVPAAGATALSPEMQENVKKCKNFLATLIKLASHNSPSPETSRNVKALVQ
DLLDAKIEPEEFTSRLQTELKSSPQPYLIPFLKKSLPALRMTLLNSQQSLTQLSQPTPST
PLAVGAIKAPPPPRSLATTVPPVRPAVVQDQTAIKRVGAQVAPPRMPVVIAQTIRPQVPV
VRGQTVHVRGPVGVTIQASANLKQKLNDPGGGTFKDDDDINDVASMAGVNLNEENARILA
TGSELVGTQIRSCKDEAFLQAGLLHKRILEIARKFGVNEVGGDVVSLVSHAAEMRLRTML
ENVSALAQHRTDSCKDEERYEQASDVRTQLKFFEQLERLEKQRKDDEEREILLKVAKSRS
RQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDTGASASGEVSGGS
LGSAASSSSSSSTRQVRQRITRVNLRDLIFCLEQERSTARSLLLYKALLK
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgtccccgatccgctggaagacatgctttactcagacgtggacgagaaagcc
gtcagcgacctcgtaggctctttagaatcgcagctcggtgggccggacgagtccgcagct
ccgcagggcgacgggaggcgctccgggccgccgcaagcacacaatcccaacttgggacag
tcgcagcccgctcaggcggcggaccggcggcgctcgggactccagagagccgagccaaag
ctggaggtcggcggcgctcgggaaaacggctccgaggggatcccggcctccgtgaacgcg
gcgccgagctccgtgctggtgggcgctgctgctgcggcgagtcgcttgcagcctctcggg
aaagcaaagcctgcagtgggacttctaacttcagcgaactgttcaagtgacgcagcagtt
gtagcaccatcatcatcgtcaccatcacctcctacagattctctccctcacacaaatcac
atatcgtctgccatacggaccgtttcctccagagtcctgcctagtgagagtggaagcagc
gggacagtgactgttaactctcctgctgttgcctctgctcccactgctggagctggagtt
caaaccagtgtgagtgctggtgccactggtgctgttggcgccactggctctggtttgggt
aacgagaacggcaacatggcctcttctaatggcacaaatggtcctctggtgtctgctcag
cctgatcatatgttgtcccaacctgctgatccgtcaggtagtcaggcagcccctgctgtt
gcactgcacagacctccaaacgttttgcccaatggaagtgaccctaaagttgcagcgttg
cccgcacagggtgtcagtgctgctgctgtcccggcctcgaccgtggcgttttcaaatgcg
aatcctagtttagtgaaggccagcccacaagcccagattaaaaccattgtccccaatcag
cttgctggaagccctgtgggcctgcatccgtctccgcccgctccggtcactgtacctgct
agcagcatgcaggcaaacgcctcgcttccagtggcaagcactccctcagtcctagtgaag
ccggaaggtggccttgttgggcagcccacgggcttgttgaggcctggcactgcggcacct
gtggtggctaccacggcggtgcctcagcgacctggagtacctgtagccccaagggccgtg
gtgccccagatcactgtcagaccccaacagcagaccactattcagttacctccaggattc
accataccacagggaatggtgctggttcggacagaagctggtcagctggtgttggttcca
cagcaggttttggcccaggccaaggctcagaatcagaataaacctgctctgtcccccagg
ccggcaacgccaaccacagcagccacctttagagtcaccactccagtggctcagccagca
gtaacttcccccaccatccgccccattcccccggcccagatgaaggtggtacagacagca
agccctgccagccctgctcttcagaagagtccggtggtgacggtcagttctgctcaaaaa
cctgctggccccacagtcatcacggctggagctcgtgtccagacccctcctcagaatctc
ctgaaaccctcccctcctgtcccagcatccactgtcccagccgcaggagccactgccctc
tctccggaaatgcaagagaatgtgaagaaatgcaagaacttcctagctacgctgatcaaa
ctggcatctcataattccccctctccggaaacatcccggaatgtgaaggcgctggtgcaa
gacttgctggatgccaaaatcgagcctgaggaatttacaagtcgtctgcagacggagctg
aagtcgtctcctcagccctacctcatccccttcttgaagaaaagtctgcccgctctgagg
atgaccctcctgaactcgcagcagtctctgacgcagctttcccagcccacgccctccacc
cctctcgctgtgggcgccattaaagccccacctcctccccgctccctcgccaccacagta
ccccctgtccgacccgctgtcgtccaggaccagactgccattaagcgggtaggggcacaa
gtcgctccacctaggatgcctgtcgtgatcgcccagacaatccgacctcaagttcctgtg
gtcagaggacaaacagtacatgtgagaggtcctgttggcgtcaccatccaggcctcagcc
aatctgaaacagaaactgaatgacccaggaggtggaactttcaaggatgatgatgacatc
aatgatgtggcatcgatggcaggtgttaacctgaatgaggagaatgctcgaattttagcc
acgggctccgagctggtgggcacacaaatccgctcctgcaaagatgaggcctttctgcag
gctggcttgctgcacaagcgcatccttgagatcgcgcgaaagtttggggtgaatgaggtc
gggggggacgtggtgagcctggtgtcccacgctgctgagatgaggctccgcaccatgttg
gagaacgtctccgctctcgcacaacaccgcacggactcctgcaaggatgaagagcgctat
gagcaagcgtcagatgtgaggacgcagctgaagttcttcgagcagttggaaaggctggag
aaacagcgcaaagacgacgaggagagggagatcctgcttaaagtagccaaaagtcgttcc
aggcaagaagaccctgagcaggctcggctaaagcagaaagctaaagagatgcagcagcag
gagttggcccagatgaggcagcgcgatgccaacctcacagccctggccgctatagggcca
cgcaaaaaacgcaaactggacactggggcctctgcgtctggagaggtgtctggaggctct
ttgggctcagcggcctcttcctcctcttcctcctccacacgacaggtccggcagcggatc
acgcgggttaacctcagggacttgatcttctgcctggagcaggagcgctccacagcccgc
tcgctgctgctctacaaagctctgctcaaatag
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integrated database retrieval system
