Colossoma macropomum (tambaqui): 118806908
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Entry
118806908 CDS
T09004
Symbol
zgc:153681
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03008
Ribosome biogenesis in eukaryotes
cmao03013
Nucleocytoplasmic transport
cmao03015
mRNA surveillance pathway
cmao05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118806908 (zgc:153681)
03015 mRNA surveillance pathway
118806908 (zgc:153681)
03008 Ribosome biogenesis in eukaryotes
118806908 (zgc:153681)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118806908 (zgc:153681)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118806908 (zgc:153681)
03009 Ribosome biogenesis [BR:
cmao03009
]
118806908 (zgc:153681)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118806908 (zgc:153681)
mRNA cycle factors
Stress granule specific factors
118806908 (zgc:153681)
Ribosome biogenesis [BR:
cmao03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
118806908 (zgc:153681)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_9
LRR_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
118806908
NCBI-ProteinID:
XP_036424488
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MVPFRRWYQNLAVVTRVRPDFLEEDVDGVPGVREVWSNVSFPGEHDDRVGGPQFRNRKGR
GPFRGHMPSQPVRQRLRGGPVGGFGAGPRSRLEDEDGDVTMSDGQDGVSQRRFNPYGRPN
RRDGRFDRDKRGGGGGFMGYRSAGGSGAMGDATRLGGGTNSEKSRSWFKITIPYGKKYDK
KWLLTALQNLCPLPFSPIHYSTEGQKVQFYLDDATSANALCKLTRRITDTEGYKVVVFMN
PCPPPSFLQSDLKEQDLEHLKQCMSKRFDRSKQYLNLNSIRTDPALVSQNIEVILSRRSC
MQAVIKIIEENIPELACLNLSNNKLYKLDDLAELVNKAPNIKTLNLSHNELKSEKELDRV
KGFKLTELWLDRNPLCDHFKDQSTYISAIRERFPRLLKLDGHDLPAPIGFDVETGTTIPP
CKGSHFGSDEIKEFILRFLQQYYSVYDSGDRQPLLDAYHEGACFSLSLPFSMHNPSRSSL
GDYHKDSRNIKKVKDPATRFRLLKHNRLNVVAFLNELPKTQHDTASFSVDVNTYTQMLLA
FTVSGVFKEVDGKSRDSVRAFSRVFIAVPAMNSGLCLVNDELFVRNATTEEIRRAFAAPA
PTPSSSPVPTLSASQLEMLSAFSQKSEMNLEWSQKCLQHSEWDFSRAVQIFTELKAQGSI
PEAAFIK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggttccgttccgcagatggtaccagaatctcgctgtggttacacgtgttcgcccagac
tttctagaagaagatgttgatggagttcccggtgtaagagaggtctggagcaatgtcagc
tttccaggagagcatgatgaccgtgtgggtggccctcagttccgtaatcgcaagggtcgt
ggacccttcagaggtcacatgcccagccagccagtacgtcagcggctccggggtggtcct
gtgggaggctttggcgctggaccccgcagcaggcttgaggatgaagatggtgatgtgact
atgagtgatggccaagatggggtgtcccagcggagatttaatccttatggaaggccaaac
cgaagagatggcagatttgatcgagacaaaagaggaggtggagggggattcatgggatac
aggtcagcaggaggaagtggagcaatgggggatgcaacaagactaggtggaggaacaaac
tcagaaaagtccagaagttggttcaaaataacgataccgtatggcaagaaatatgataag
aagtggcttcttactgcactgcagaatctctgccctttaccttttagtccaatacactac
tccacagaggggcagaaagtgcagttctacttagatgatgccacctctgctaatgccctg
tgcaaactcactcgcaggatcacagatactgaaggatataaggtggttgtgttcatgaac
ccctgcccacctccttccttcctccagagtgaccttaaagagcaggacctggagcactta
aaacaatgcatgtccaagcgttttgatcgctccaagcagtatctcaatctgaacagcatt
cgcaccgatccagctttagtgtctcagaacatcgaggtgattttgagcaggaggagctgc
atgcaggctgtgattaagatcatcgaggaaaatattccagagctggcatgtctcaaccta
agcaataacaaactgtacaagttggacgatctggcagagctggtgaacaaagcacccaac
ataaagacactcaacttgtcccataatgagctaaagtcagagaaggagctggacagagtg
aagggttttaagttgacagagctgtggctggatcgcaaccctctgtgtgatcacttcaaa
gaccagtccacatacatcagcgctattcgtgagcgattccccaggctcctaaaactggat
ggccatgatcttcctgcaccaataggctttgatgttgaaactggcactacaattcctccc
tgtaagggcagtcactttggttcagacgaaatcaaggaattcatcctccgtttcttgcaa
caatactacagcgtgtatgactcaggagacagacagcctctgctggacgcctatcatgaa
ggagcctgcttctctctcagtcttcctttctccatgcacaatccttccaggtctagtttg
ggagactatcacaaagacagtcgcaatattaaaaaagtcaaagatcctgccacacggttc
cgcttgttaaagcacaatcgacttaatgtagtcgccttcctaaatgaactcccaaagact
cagcatgacacagcttctttcagtgtggatgttaacacctacacacaaatgttactggca
ttcacagtgagcggagtatttaaagaagtggatggaaagtcaagagactccgttcgtgcg
ttctctcgggtctttatcgcagttccagccatgaattctgggctgtgtttagtcaacgat
gagctgtttgtgaggaatgccactactgaggagatccgccgtgcgtttgctgctccagcc
cccaccccttccagcagccctgtgcccaccctttctgcctctcagctagagatgctctcg
gcattctcccagaaatctgagatgaatctcgagtggtctcaaaagtgtctgcagcatagt
gaatgggacttcagccgagccgtgcagatctttacagaactcaaggctcagggctccata
ccagaagccgctttcattaaatga
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