Colossoma macropomum (tambaqui): 118807161
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Entry
118807161 CDS
T09004
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118807161 (upf3b)
03015 mRNA surveillance pathway
118807161 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118807161 (upf3b)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118807161 (upf3b)
mRNA cycle factors
P-body specific factors
118807161 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
118807161
NCBI-ProteinID:
XP_036424933
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MKEDKENTRPREKKVEIKCEESEKTEKPNKEKKETMTKIVIRRLPPSLTKEELEEQLQPL
PEVDYLEFFSSDTSLYPHLFARAYLNFKNQEDIVLFRDRFDGYVFIDNQGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIEEDADYKRFLEIYSGDDEKLSSTPETLLEEIEAKTKELFA
KKTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKAE
KVPEKDKDQAKEEQPKIKLLKKPDKPENGDTEKPKEKQKKPDREKLKDDRAPGGADAKKR
QNGEHREDKTRKLEEDGRKEHRDRDADRDRNRERDHRQKEKDRITRQDEERRRRKERHDG
ENTYKKREDEGKKEKERIWEKRKNEHAGDSSGHTQPDKTEKSSKDGKKEENVKKDRLRNK
DRPAIQLYQPGARSRNRAGDSRAGDKKAETDARNTQEKGEE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaatacgcggcccagagaaaagaaggtggaaataaaatgtgaa
gaaagcgaaaaaacagagaagccaaacaaagagaagaaggagactatgacaaagatcgta
attcgtcgcctccctcccagtctaactaaggaagagctagaggagcaactgcagcctctc
ccagaagtggattatcttgagttcttctctagtgacaccagcctctaccctcaccttttt
gcaagagcatacctaaatttcaagaaccaggaggatattgttctttttagagaccgattt
gatggttatgtcttcattgataatcaaggccaagagtaccctgcgattgttgagtttgcg
ccattccagaaggttgcgaagaagagaagtaagaagaaggatgccaaaagtgggacgatc
gaggaagatgctgattataagagatttttggagatatacagtggcgatgatgagaaactt
tcttccacccctgagacattattagaagaaatagaggccaagacaaaggaactgtttgca
aagaaaacaacccctctgttggactttcttaagaacaaacagaggttaagagaggaaaag
aaggaggagaggagaaggagagagttggagcgaaaacgcttgcgtgatgaagaaaggcgc
aaatggagagaggaggacagaaggaagcgcaaagaggctgagaaattaaaaaaggcagaa
aaagtacccgaaaaagacaaagaccaagctaaagaggagcagccaaaaatcaagctcttg
aagaaaccagataaaccagagaatggagatactgaaaagccaaaagagaagcagaagaag
ccagaccgtgaaaaactgaaggatgacagagctccaggaggagcagatgcaaagaaacgt
caaaatggtgaacacagagaagataagacaagaaaattagaggaggatggacggaaggag
cacagagatcgcgatgcagacagagaccgtaatcgagagagggaccaccgtcaaaaagag
aaggaccgaatcacgaggcaggacgaggagcgtcggaggaggaaggagcgacatgatgga
gagaatacttacaaaaagagagaggatgaggggaaaaaagaaaaggagcgtatttgggaa
aagagaaagaatgagcatgctggagactcctctggtcacactcaacctgacaagactgag
aagtcctctaaagatggtaaaaaggaggaaaatgtgaaaaaggaccgtttaagaaacaag
gatcgacctgccattcagctgtaccagccaggggcgaggagccgcaatagagctggagac
agcagagctggagataagaaggctgagacggacgcaaggaatacacaggagaagggcgaa
gagtga
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