Colossoma macropomum (tambaqui): 118807826
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Entry
118807826 CDS
T09004
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cmao04040
]
118807826 (scn1lab)
Ion channels [BR:
cmao04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118807826 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Zip
IQ
RhlB
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
118807826
NCBI-ProteinID:
XP_036425847
LinkDB
All DBs
Position
Unknown
AA seq
2003 aa
AA seq
DB search
MAAQLLVPPGPDSFRPFIPESLAAIERRIAEEAAHRPKGERRSDEDDENGPKPNSDLEAG
KSLPFIYGDIPSGLVSVPLEDLDTYYHDQRTFIVLNRGKAIFRFNATPALYILSPFNPLR
RAAIKVLVHSMFSFVIMCTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGF
CVGNFTFLRDPWNWLDFSVIVMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMPQSNGTEGLANSSLTAAF
NLSADKGLNTFNWTQYILDESNYYFLPNRRDALLCGNASDAGQCPEGFQCIKAGRNPDYG
YTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNLILAV
VAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGLSEES
SSGGSRLSSKSAKERRNRRKKRKQKEEEEEKADQEKFHKSESEDSIRRSGFRFSIDANRL
SYEKKCSTPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFEDSDS
RRGSLFVPRRIERRNSTVSQCSLGAPRIVLPANGKMHCTVDCNGVVSLVGGTSVPTSPIG
RLLPEGTTTESEARKKRSGSHQASDYLDDAVARKRAMSVASILTNTMEELEESRQKCPPC
WYKFANTFLIWDCCPLWLKVKQIVSLVVMDPFVDLAITICIVLNTLFMAMEHYPMTKEFN
DVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYR
ECVCKISEDCELPRWHMVDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVFMLVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQKGIALIKSVLQQFFQSL
FLAGGKPGALDEEKPLDDLHSDGKENCLANHAPVAVDLGKDFLKEGCVSPGNGVEGHVKY
GIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLPVDTVLSSS
EGSTVDIRPPGEGAESVELEPEESLDPEDCFTEGCVMRFQCCQVDVEKGRWRSWWTLRKT
CFVIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEYADKVFTYVFILEMLLK
WVAYGFVKYFTNAWCWLDFLIVDVSLVSLIATALGYSELSAIKSLRTLRALRPLRALSRF
EGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNSTTDELFPIDMV
NNKSECMALNDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNVEEQPDY
EVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKK
LGSKKPQKPIPRPTNKFQGLIFDLITKQAFDIIIMILICLNMVTMMVETDDQTKEMDNIL
YWINLVFIVLFTGECVLKMVSLRHYFFTVGWNVFDFVVVILSIVGMFLSEVIEKYFVSPT
LFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFA
YVKHEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKHEPDCNNKAEHPGNSYR
GDCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWE
RFDPNATQFVEYDKLSDFADSLDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDILFAFTL
RVLGEEGEMDALRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIVIQRAFRRYRIRL
TVKKASDMYRQRLKDGGEHPPEKEVLVIGKFHENSASDKTDMTPSSASPPSYNSVAKSEK
DKYEKERREKEDNVKDNARERKK
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccagctgctcgttcctcccggacctgacagcttccggcccttcattcccgaa
tccctcgctgccatcgagcggcgcatcgcagaggaggcggcccaccgtcccaaaggagag
aggcgcagtgatgaagacgacgagaatgggcccaagcccaatagtgacctggaggcgggg
aaatccctgcccttcatctacggggacatcccatcgggcttggtgtctgtccctctggag
gacctggacacctactaccacgaccagagaacctttatagtattgaaccgtgggaaggct
atattccgcttcaacgccacgcctgccctctacatcctcagtcccttcaaccctctgagg
agagccgccattaaagtgctggtgcattcgatgttcagtttcgtgatcatgtgcaccatt
ttgaccaactgcgccttcatgacgctcagcaaccctccagaatgggccaagaatgtggag
tacacattcacagggatctacacatttgagtctctgattaagatcctggcccggggattc
tgtgtggggaatttcacgttcctgcgagacccctggaactggctggacttcagcgtcatc
gtcatggcgtatgtaactgagtttgtaaacctaggcaatgtgtcagctctccgcactttc
agagtgctcagagcattgaaaacaatctcagttatcccaggcctgaagaccatcgtgggc
gctctcatccagtcagtgaagaaactgtcggacgtgatgatcctaactgtcttctgcctg
agtgtgtttgcactaattggcctgcagctgttcatggggaacctgcggcagaagtgtgtg
aggatgccgcagtccaacggcactgagggcctggccaacagcagcctgaccgcagcattc
aacctcagcgcagacaaagggctgaatacctttaactggactcagtacattctcgatgag
agtaattattatttcctccccaaccgccgagatgctttactgtgtgggaatgctagcgat
gcagggcagtgtccagaaggttttcagtgcataaaggctggacgtaaccctgactacggc
tacacaagcttcgacacgttcagctgggccttcctctccctcttccgccttatgacacag
gacttctgggagaatctctaccagcagactcttcgtgctgctggaaagccctacatggtg
ttctttgtgctggtgattttcctgggctccttctacctggtcaatctaatcctggctgtg
gtggcaatggcttacgatgagcaaaaccaggctaccattgaggaggcccaacagaaagag
gaggagttccaggccatgttggagcagctaaaaagacagcaggaggaggcacaggttgcc
gcggcagcagcgacagagagcggcgagtacagcgggaggggcgggttgtcggaggagagt
tcctctggggggtccagactcagctccaagagcgccaaggagcggcggaataggcgtaaa
aaaagaaaacaaaaggaggaggaagaggagaaggcagaccaggagaagttccacaaatcg
gagtcggaagacagcatcaggcgatcgggatttcgcttctccatagatgctaacagactc
tcctacgagaagaagtgctccaccccaaaccagtctctcctcagtatccgaggttctctg
ttctctccgaggaggaacagtcgtgccagtttgttcagctttcgcggtcgagcgcgagac
ttcggctcagagaatgattttgcagatgatgagcacagtacatttgaggacagtgacagt
cgtcgaggatcgctctttgtgccacggcgcatcgagaggagaaactcgaccgtcagtcag
tgcagcctcggtgccccccggatcgtgctcccagccaatgggaagatgcactgcacagtg
gactgcaatggagtggtttctttggtgggtgggacgtctgtgcctacatcaccgattggc
cggttgcttcctgagggcacaactacagagtctgaagcccgtaagaaacggtcagggtca
catcaggcctctgattacctggatgatgcggtggcaagaaaaagagctatgagtgtggcc
agtattctcacaaacaccatggaggagctagaggagtccaggcagaagtgtcctccatgc
tggtacaaatttgccaacaccttcctgatctgggactgctgtccactttggctgaaggtg
aagcagattgtgagcttggtggtgatggacccgtttgtagacttggctatcaccatctgc
atcgtcctcaacacgctcttcatggccatggaacactaccccatgaccaaagagttcaac
gatgtgctctctgttggaaacctggtgttcacagggatcttcacagctgagatgtgtctg
aaggtcattgccctggacccttactactactttcaggagggctggaacatatttgatggc
atcattgtgagcttaagcttgatggagctgggcctggccaatgtggagggtctgtctgtg
ctcaggtcattcagattgctgagagtgttcaaactggccaagtcatggcccactctaaac
atgctgatcaagatcatcgggaactcagttggcgccctgggcaatctgaccctcgtcctg
gccatcatcgtcttcatctttgctgtggtaggcatgcagctgtttgggaaaagctatcgt
gaatgtgtgtgtaagatctcggaggactgtgagctgccgcgctggcacatggtggacttc
ttccactccttcctgatcgtgttccgtgtgctgtgtggagaatggatcgagactatgtgg
gactgcatggaggtggccggccagaccatgtgcctcatcgttttcatgctggtcatggtg
atcggcaacctggtggtactaaacctcttcctggccctgctgctgagctctttcagtgct
gacaacctggctgccacagacgacgacagcgagatgaacaacctgcagatcgccgtaggc
cgcatccagaagggcatcgccctgatcaagtcggtccttcagcagttcttccagagcctg
ttcctggccggtggcaagcccggggccctggatgaggagaagcccttggatgaccttcac
agcgacggcaaagagaactgcctggccaaccatgctccagtggctgtcgacctaggcaag
gacttcctcaaggagggctgtgtgtcccctggaaacggggtcgaaggtcacgtgaagtac
ggcattgaggaaggggactacatgtcgtttatccacaaccccagtctcactgttaccgtg
cccatcgcggtgggagagtcggactttgagaatctgaatactgaagatttcagcagcgat
tcatccgatgtggagggcagcaaagagaagcttcccgtggacacggtactcagctcgtcc
gaaggaagcacagtggacatccgaccccccggagagggggccgaatcagtagagctagag
ccagaagagtcactggacccagaggactgcttcactgaaggctgtgtgatgaggtttcag
tgttgtcaggtggacgtagagaagggaagatggaggagctggtggactctgaggaagaca
tgctttgtcattgtcgagcacaactggttcgagtccttcatcattttcatgatcctccta
agcagtggagctctggcgtttgaggatatctacatagagcagcgaaagacaataaaaaca
gtgctggaatatgctgacaaagttttcacctatgtcttcatcctggagatgttgctgaaa
tgggtggcgtatggcttcgtcaaatacttcaccaatgcctggtgctggctcgacttcctt
attgtagatgtgtctttggtcagtctgattgccactgctttaggttactctgagttaagt
gccattaaatcactgaggaccttacgtgccctgagaccactaagagcattgtcacgcttc
gagggcatgagggttgtagtgaacgctctgctgggtgccattccctccatcatgaacgtg
ctgctggtgtgtctgatcttctggctcatcttcagcatcatgggcgtcaacctatttgct
ggcaaatactatcactgcgtcaacagcaccacggatgaactcttccccattgatatggtc
aacaacaagtctgagtgcatggccctcaatgacagcgctcgctggaaaaatgtcaagatc
aacttcgacaacgtgggagctgggtacctggccctactgcaagtggctacttttaaaggt
tggatggacatcatgtatgcagcagtagactctcggaatgtggaagagcagccagactat
gaagtgaacctctacatgtatctgtattttgtcatcttcatcatctttggatccttcttc
acactgaacctcttcattggtgttatcatcgataacttcaaccagcagaagaaaaagttg
ggaggtcaggatatcttcatgacagaagaacagaagaaatactacaatgccatgaagaag
ctaggctcaaagaaaccccagaagcctatccccagacctacaaacaagttccagggcctt
atctttgatttgatcaccaaacaagcctttgacatcatcattatgatcctgatctgcctg
aacatggtgacaatgatggtggagacagatgaccagacaaaagagatggacaatatcctg
tactggattaacctggtcttcatcgtgctcttcactggtgaatgtgtgctcaagatggtt
tcactgcgacattacttcttcaccgtcggctggaatgtgttcgactttgtggtcgtgatt
ctgtctattgtcggtatgttcctctctgaggtaatcgagaagtactttgtctctcctacc
ttattccgagtcatccgactggctcggatcggccgcatcctccgtctcatcaagggggcc
aagggtatccgtacgctcttgtttgccttaatgatgtcccttcctgcccttttcaacatc
ggactcctcctcttccttgtcatgtttatctatgccatctttggcatgtccaactttgcc
tatgtgaagcatgaagctggcatcgacgacatgtttaactttgagacgtttggcaactcc
atgctgtgcctcttccagatcaccacgtcagccggctgggacggcctgctggcgcccatc
ctgaacaaacacgagcctgactgcaacaataaggccgaacaccctggcaattcatatcgt
ggtgactgcggcaacccctcggtgggcatcttcttcttcgtcagctacatcatcatctgc
ttcttgattgtggtcaacatgtacattgccgtcatcctggagaacttcagtgtggctacg
gaggagagtgcagagccactgagcgaggatgactttgagatgttctatgaggtgtgggag
cgcttcgaccccaacgccacacagtttgtggagtacgacaagctgtctgactttgccgac
tccctggacccgccgctgcgcatccccaaacccaacaagatccaactgattgccatggat
ctgcccatggtcagcggggaccgcatccactgcctggacatcctgtttgctttcaccctg
cgagtgctgggggaggagggtgagatggacgcactgcgtggccagatggaggagcgtttc
atggcatctaacccctccaaggtgtcctacgagcccatcaccaccacgctgcgccgcaaa
caggaggagatgtcagccattgtcatccagagagccttccggcgctaccgaatccggctc
accgtaaaaaaggcctcagacatgtaccggcagaggctgaaggacggcggcgagcacccc
cccgagaaggaggtgcttgtgattggcaagttccatgagaactcagcatctgacaagaca
gacatgaccccgtcctctgcctcgccgccctcctacaacagcgtggccaagtcggagaag
gacaagtatgagaaggagaggcgcgagaaggaggacaatgtgaaagacaatgcacgcgag
aggaagaaatga
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