Colossoma macropomum (tambaqui): 118807920
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Entry
118807920 CDS
T09004
Symbol
si:dkey-156n14.5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118807920 (si:dkey-156n14.5)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118807920 (si:dkey-156n14.5)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118807920 (si:dkey-156n14.5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118807920
NCBI-ProteinID:
XP_036425997
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MRGSSSYGDRDRDRDRGRDRGPRFGSSRGGPPPPKKFGNPGDRLRKKKWDLDELPKFEKN
FYSEHIEVQRMTQYEVEEFRRKKEITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEP
TAIQSQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTR
ELAQQVQQVAYDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY
VQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDEL
TRRMRRDGWPAMCIHGDKSQPERDWVLSEFRSGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDT
GRGGGGGRMRYRGSGSNSNNPNLMYQEECDRRMRSVGGGGGGKDNRGGNYGRDTRSGGGS
RDDRSSASSSYRDRSRDGRNSYNSGSSYGGGGGDQYQNYSGSGGGQYGSRGGGSQSGGGS
GGGGGGQNQPGPSQGPFGQPPPPPPQPGAGPQPLMAQQFPPPPQPMMGFMGPGPYSFAPP
PPPPPPQQRK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagagggagttcatcgtatggcgatagagacagggacagagaccgcggacgtgaccgg
ggaccccgttttgggtccagccgtggaggtccaccccctcctaagaaatttgggaatcct
ggcgatcggctgaggaagaagaaatgggatcttgatgagttgcccaaatttgagaaaaac
ttctacagtgagcacattgaggtccaacgcatgactcagtatgaagtggaggaattccga
agaaagaaggagatcactgttagagggtctggctgcccaaagccagtgacaaacttccac
caggcacagtttcctcagtatgtgatggatgtgctgctacaacagaatttcaaggagccc
acagccatccagtcccagggattccccctggcccttagcggcagggatatggtgggcatt
gcacagaccggatctggcaaaacactcgcctatctccttcctgccattgtccacatcaac
caccagccctacctggagagaggagatggaccaatttgtttggttctggctcccacgcgt
gagctggcccagcaggtgcagcaggtggcatatgattacggcaagtcctcccgaatcaaa
agcacctgcgtgtatggaggagcccctaagggtccacaaatcagagatttagagagaggt
gttgagatctgcattgctacacctggacgtctgatcgacttcctggaggcaggaaagacc
aacctgcggcgatgcacttaccttgtgctagatgaggctgaccgcatgctggacatgggc
tttgagccacagattcgcaaaattgttgaccagatacggccagacaggcaaacactgatg
tggagtgctacctggcctaaagaggtgcgtcagctggcagaagatttcctccgtgactac
gtccagatcaacatcggggccctggagctcagcgccaaccacaacatcctacagattgtg
gatgtctgcatggagaatgagaaagataacaagctgattcagttgatggaggaaatcatg
gcagagaaagagaacaagaccatcatctttgtggagacaaagaaacgctgtgatgaactg
acacgtaggatgaggagagatggatggccggcaatgtgcatccacggtgacaaaagtcag
ccagagagagactgggtgctctcagagttccgcagtggtaaagctccaatccttattgct
actgatgttgcctcccgcgggctggatgtggaagacgtgaagttcgtcattaactacgac
tatccgaactcttcagaggattacgtgcaccgcatcgggcgtactgctcgcagcacaaac
aaaggcactgcctacactttcttcaccccaggaaatctgcgccaggcccgcgacctggtc
cgggttctggaggaggcccggcaggccatcaaccccaaacttctgcagctggtcgacact
ggacgtggaggaggaggtggaaggatgcgttaccgtggtagtggctccaactcgaacaat
cccaacctgatgtaccaggaggagtgcgaccggcgcatgcgctctgtaggagggggtggt
ggcggaaaagacaaccgcggcggcaattatggccgcgacacccgctcaggcggtggcagc
cgtgacgacaggtcttccgcctcttcctcgtacagggaccgcagtagggatggacgcaac
agctacaactcaggctcatcttatggtgggggagggggtgaccagtaccaaaactacagt
ggcagtggaggggggcagtatggctccagagggggtgggtcacagtcaggaggtggcagc
ggcggtggtggtgggggccaaaaccagcccggaccctcgcagggcccgttcggacagcca
ccacctcctccacctcagcctggggctggaccacagcccctcatggcccagcagttccct
ccgccccctcagcccatgatgggtttcatgggcccggggccatactcgtttgccccacct
ccaccacctccccctccgcaacagagaaagtga
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