Colossoma macropomum (tambaqui): 118807940
Help
Entry
118807940 CDS
T09004
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118807940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118807940
03009 Ribosome biogenesis [BR:
cmao03009
]
118807940
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118807940
Spliceosome [BR:
cmao03041
]
Complex A
U1 snRNP components
U1 related factors
118807940
Complex B
118807940
Ribosome biogenesis [BR:
cmao03009
]
Eukaryotic type
Pre-60S particles
Helicases
118807940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
118807940
NCBI-ProteinID:
XP_036426034
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MPGYSDRDRGRDRGYGGGAPRFGSGRSGPPTGKFGNPGERLRKRHWNLDELPKFEKNFYK
EHPDVTRRSMQEVEQYRRAKEVTVKGRDCPKPVMKFHEATFPNYVMEIINKQAWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASHLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQI
NIGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKACILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLLQMAEDRGG
RSRGGRGGYKDDRRDRYSSGGRRDFGSYRDRDSDRGYGSGPKVQNGSYNGGNSYNKSNNS
NSNYSSNGYSSNGQASYGNGGNPPNAFGGQNFQNQSFPGNQAPVQNGMNHPPFPFNPPQP
PQAHQQPPQPMVPYPMAPAFPQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagatcgtggaagagataggggatatggcggcggtgctccc
cggttcggctctggccgcagtggcccccctactggaaaattcggcaaccctggcgagagg
ctccgtaagagacactggaacctggatgagcttcccaaatttgagaagaacttctacaag
gagcatcctgatgtcaccaggaggtccatgcaagaggtggaacagtaccgcagggccaaa
gaagttacagtgaaaggaagagattgccccaagcctgtcatgaagttccatgaagctacc
ttccccaattacgtgatggagattattaacaaacaggcgtggtctgagcccacccctata
caagctcagggctggcctcttgcccttagcggaaaagacatggtcggcatcgcccagact
ggctctggaaaaacacttgcctacctgttgccagctattgtacatattaaccaccagcca
tttcttgagcgtggagatggacctatttgtctggtgctggcgcctactcgtgagctggct
cagcaggtgcagcaggtcgctgcagagtacggaagagcctcacacttgaagtccacctgc
atctacggaggagctcccaaaggaccccagatccgggacctcgagagaggtgttgagatc
tgcattgccactcctggacgtctgattgacttcctggaggcaggaaagaccaatctgcgg
cgctgcacatatctggttctggacgaggctgaccgcatgctggacatgggcttcgagcca
cagatccgcaaaattgtagatcagatccggccagacagacagacactcatgtggagtgct
acctggcccaaagaggtgcgccagctggccgaggatttccttaaggagtatgttcagatc
aacattggtgctctacagctcagtgccaaccacaacatcctgcagatcgtggacgtctgc
aacgacggggagaaggatgacaaactgatccgcttgctggaggaaatcatgagcgagaag
gagaataagactatcatctttgtggaaaccaagaggaggtgtgatgaactgacacggagg
atgaggagagatgggtggcctgccatgggaattcatggagataaaagccagcaggagaga
gactgggttctgaatgaattcaaatttggcaaagcctgcatcctcatcgctacagatgtg
gcctctcgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccctaac
tcctctgaggactatatccaccgaattgggcgtacggcccgcagtcagaaaacgggcaca
gcctacaccttctttacaccgaacaacatgaaacaggctaacgacctcatctctgtcctc
cgtgaggccaaccaggccatcaaccccaagcttctgcaaatggccgaggaccgaggaggt
cgttccagaggtggtcggggaggctacaaggacgaccgccgggaccggtattccagtggg
ggtaggagagatttcggtagctatagggatagagattctgacaggggttacggtagcgga
ccaaaggtgcagaacggcagttataacgggggtaacagctacaacaaaagtaataatagc
aacagtaactacagcagcaatggctacagcagcaacggacaggccagctacggcaacggg
gggaacccgcccaatgccttcgggggtcagaacttccagaaccagtcgttcccggggaac
caagctccagtccagaatggaatgaaccatcctcctttcccctttaacccccctcagccc
ccacaggcccaccaacagcccccccagccgatggtgccctaccccatggcccctgccttc
ccccagtag
DBGET
integrated database retrieval system
