Colossoma macropomum (tambaqui): 118808273
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Entry
118808273 CDS
T09004
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118808273 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118808273 (smarcc2)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118808273 (smarcc2)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118808273 (smarcc2)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118808273 (smarcc2)
PBAF complex
118808273 (smarcc2)
GBAF(ncBAF) complex
118808273 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
118808273
NCBI-ProteinID:
XP_036426716
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKSFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKQSSSHVVVP
IPASLEEEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAVVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGGTRRKRISAKTLTDEVSAPDERRDKKPGNAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDVDEPSPVPAAEEGSLNKTV
TKKDSDSTPVKGGTDLDEQEDESMETVGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHHI
IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST
ACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPL
QPKASQTPSSQQMLSFPDKVKDKPTDLQNFGLRTDMYNKKSGPAKGKNAASATREWTEQE
TLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSSLGPLAYQPVP
FSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAARV
SGRPDPLYGLEGSGIAGTGLEESEKPAEESSEESKSSDGQPSEDKRESKEGKDGASEEEE
KQGENGKKEEERAREGETEREAEKTDSEMGDAEKEKEGKEGSEEGQREGESEGERKAKVE
RDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
TIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQPGNA
PPAPHQSAPNTSAPPPTPSPAPATSTNAPNEAPPPSASHTSPPNNTQTGAVHDSSAPLAG
DSLHPNALVPPSQ
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatact
gtctcacagttcgacaatgtccgagtgtggctgggcaaaaactataaaaagtacattcaa
gcggagccccccaccaacaagtctttgtccagtctggttgttcagctgctgcaatttcag
gaggaagtttttggccgacatgtcagcaaccctcctctcaccaagctaccgatgaagagt
tttctggatttcaaagccggaggagctctgtgtcacatacttgctgctgcctacaagttt
aagagtgaccaaggatggagaaggtttgacttccagaatccttctaggatggaccgaaat
gttgagatgtttatgaccatagagaagtctttggtacagaataactgtctgactcggcct
gtgatctacctgagctcagagattgagcctaagctgctagggaaactgaaagacatcatt
aaacgacatcaggggtcagtgactgaagataaacagtccagttctcatgtggtagtgccc
attcctgccagtctggaggaggaggagtgggtccgtcctgtaatgaagagagataaacag
atgctgctacactggggctattggcctgacagttatgacacatggatctcagccagtgaa
gttgaggcagtagtggaggatcctcccagtccagagaaacccagaaaggttcacgctaag
tggattctggatttagaccagtataatgagtggatgaatgaggaggactatgaggttggt
gaaggaggcacaaggaggaagaggatttcagccaagactctgacggatgaagtgagcgct
ccggacgagaggagagataaaaaacccggcaatgccaagaaaagaaagcgctctccttct
ccatctcccactcctcccccacaggagagcaagaagaagaacaccaagaaagggcccaca
accccctacaccaagtcgaagcgtggccagagggaggaggagcaggaggacctaactaaa
gacgtggatgagccctcacctgttcctgcagcagaggagggctcactgaataaaacagtg
accaagaaggactcagactcaactccagtgaagggtgggactgacctggatgagcaagag
gatgagtctatggagacagtgggaaaggaggaagaggagggatctcctagtgtgaaggga
gagccagtgaaaggttctgatctgcatgaggataatgtcacagagcagactcatcacatc
attattcccagctatgctgcttggtttgattacaacagtgttcatgctattgagcgcaga
gctctacctgagttcttcaatggaaagaacaagtcaaagacccctgaaatttacttggcc
taccgtaacttcatgattgacacataccgactgaatcctcaggagtatttgacctctaca
gcttgccgtagaaacttggctggagatgtgtgtgccattatgagggttcatgcctttctg
gagcagtggggtttgattaattatcaggtggattcagagagccgccccactcctatggga
ccaccacccacatcccacttccatgtgctagcagacacaccgtccagcctggtaccactt
cagcctaaagcttctcagactccgtcctctcagcagatgctgtctttcccagacaaagtc
aaggacaagccaacagatctgcagaactttgggctgcggacagacatgtacaacaaaaag
agcggcccagcaaagggtaaaaacgcagccagtgctacacgggaatggactgaacaggag
actctgctactgctggagggtctggagatgtataaggatgactggaacaaggtttcggag
cacgtgggcagtcgcacgcaggatgagtgcatccttcacttcttgcggttgcctattgag
gatccttatctggaggatagctcctcctcccttggcccgctggcctatcaaccggtccca
ttcagtcaggcaggaaaccccgtcatgagcaccgtggccttccttgcttcagtggtcgac
ccacgagtggcctctgctgcagccaagtctgctctagaggagttctctcgtatgaaggaa
gaagtgccagcggcgctggtggaggcacacgtgcgtcgggtggaggaggcggcaagagta
agcggaagaccggaccctctgtacggcctggagggcagtggtatcgccggtactggcctg
gaggaatcggagaagcctgcagaggagagcagtgaggagagcaaaagtagtgatggccaa
ccaagcgaggataagagagagagtaaagagggaaaagatggagcgagtgaagaggaagag
aagcaaggagagaatggaaagaaagaagaagaaagagcaagagaaggagagacagaaaga
gaggcagagaagacagactcagagatgggtgatgcagagaaggagaaggaagggaaggag
ggatcagaggagggccagagggaaggggagagtgagggagagagaaaagccaaggttgaa
agagatgttggagagggaaacctggccacagcagctgcttctgccctcgctgctgctgct
gtcaaagccaagcacttggctgcagtggaagagaggaagatcaagtctctggtggctctg
ctggttgagactcagatgaagaagctggagatcaaactgagacactttgaggagctggag
actatcatggatcgtgagagagaagcgttggagtaccagaggcagcagctcctagcggat
cgtcagtcattccatatggagcagctgaagtatgcagagatgagagctcggcagcagcac
ttccagcagatccagcaccagcaccatagcaaccagcctggaaaccagcctggcaacgct
ccgcctgcaccccatcaatcagctcctaacactagtgccccgcctcctacgcccagccct
gccccagcaacctccaccaacgcccccaacgaagccccacccccttcagcttctcatacc
tctccacccaacaacacacagactggagcagttcacgactccagcgctccactagcaggg
gattccctccatcccaatgccctggtgcccccatcacagtaa
DBGET
integrated database retrieval system
