Colossoma macropomum (tambaqui): 118809119
Help
Entry
118809119 CDS
T09004
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118809119 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
118809119 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118809119 (lsm5)
03041 Spliceosome [BR:
cmao03041
]
118809119 (lsm5)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118809119 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
118809119 (lsm5)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118809119 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
118809119
NCBI-ProteinID:
XP_036428002
LinkDB
All DBs
Position
Unknown
AA seq
91 aa
AA seq
DB search
MAATPASNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaacaccggcttcaaatccctctcagctgcttccactcgagctggtggacaaa
tgcatcggctcccggattcacatcgtcatgaaaaacgacaaagaaatcgtgggtacctta
ctgggtttcgatgactttgtcaacatggtgcttgaggatgtgacagaatttgagattacg
ccagagggaagaagaataaccaaactggatcagattctgctcaatggaaacaacataacc
atgttaatcccaggaggagaaggaccggaagtataa
DBGET
integrated database retrieval system
