Colossoma macropomum (tambaqui): 118810624
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Entry
118810624 CDS
T09004
Symbol
polr1b
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118810624 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118810624 (polr1b)
Enzymes [BR:
cmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118810624 (polr1b)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
118810624 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
118810624
NCBI-ProteinID:
XP_036430432
LinkDB
All DBs
Position
Unknown
AA seq
1133 aa
AA seq
DB search
MDFSSKWSSLPAAPSLKHLTQTGFGVPKDRQHAAVQDLVKAHTESFNEAVTDGLCRVVEA
IPPLEFMCKGDRISLAFVEATIHSPTVAKGAISKDLRVFPAECRGRRCTYRGKLVADISW
SVNGMPKGIIKQSLGQVPIMVKSKLCNLYGLSPKELVEHHEEAEEMGGYFIVNGIEKVIR
MLIMPRRNFPIALTRQKFKSRGQGYTEYGISMRCVRDDHSAINMNLHYLDNGTVMLNFIY
NKELFFLPLGFALKALVDFSDYQIYQELIKGKEENSFYKSCVSEMLRLVMEEGCTTRGKV
LNYLGQRFRVKLYLPEWYTNEQCAKFLLDECLCIHLKSDVEKFYMLCLMTRKLFAFAKEE
CQEENADSLMCQEVLTPGQLYLMFLKEKMTGWLVSVKLALDKKTQRGGGLNTENLSKIFN
LGTDLTKAFEYLLATGKLISKTGLGMLQNSGMCVVADKLNFIRYLSHFRCVHRGAVFAKM
RTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVTSVYPTTTLPARLCSLGVTP
VDATPGQPYSCCYPVVLDGAVIGWVEKDLAPSLVESLRRFKVLGEKKIPPWTEIVLVPQT
GKASMYPGLYLFTTSCRMMRPVRNLALGKQELIGTFEQLYLNVGIFEGDIEQDVTTHQEL
FPHSMLSVVASFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSYQDRSDNKLYRLQTPQSPL
VRPTMYDHYNMDNYPIGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDL
SEKVKGQDGVVFGTKPGDPRVGDRLDVDGLPPIGTVLNYGDPFYSYINLNTGQSFVTSFK
SQESCVVDNIKVCSNDVGTGRFKRICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDM
PFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEESSALEHF
GDMLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT
NQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLE
KPPPHWSATRHRKTVCLLCKKSDCIETVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcctcgaagtggagcagtttacctgctgctccgagcctcaaacacctcaca
cagacgggcttcggcgtcccgaaggacagacagcacgcagcagtgcaggacctcgtgaaa
gcccacaccgagtcgttcaatgaggcggtcactgatggcctgtgccgagttgttgaggcc
attcctcctttggagttcatgtgcaaaggggacagaatcagcctggcgtttgtggaggcc
accatccacagtcctactgtggccaaaggggcgatctctaaggaccttcgtgtcttccct
gctgaatgtagaggaaggagatgcacatacagaggaaagctggtggcagatattagctgg
tcagtgaatgggatgcctaaaggaattataaagcagtctttggggcaggtgcccatcatg
gtaaagtcaaagctgtgtaacctctatggcctctcacctaaagagcttgtggagcatcac
gaagaggcagaggaaatgggaggctattttatagtgaatggtattgaaaaagtgatccgc
atgcttattatgccaaggaggaactttcccatcgctttgacaagacaaaagtttaaaagc
agaggacagggctacacggaatatggcatttcgatgcgttgtgtcagagatgaccactca
gccatcaacatgaaccttcactacctggacaacggaacagtcatgctaaacttcatttat
aacaaagagctctttttccttccacttggctttgctctaaaggccctggtggacttctca
gactaccagatctaccaggagttaataaaaggcaaagaggagaactccttctacaagagc
tgtgtgtcagagatgctgcgcttggtgatggaagagggctgcactaccagagggaaggtg
ctgaactatctgggccaacgtttccgggtcaaactctacttgccagagtggtacacaaac
gagcagtgtgctaaattccttctagatgagtgcttgtgcattcatttgaagtcagatgta
gagaagttctacatgctttgtctgatgacacggaagctgttcgcctttgccaaagaggag
tgtcaggaagagaatgcagacagtctgatgtgtcaggaggtgctcacacctggacagctc
taccttatgtttctgaaagaaaaaatgacaggctggctggtgtctgtgaaattggcctta
gataagaagacccaaagaggtggaggattaaacacagaaaacctgtccaagatttttaac
ttgggaacagacctcactaaggcctttgagtacctactggctacaggcaaacttatttcc
aaaacaggtttgggaatgcttcagaacagcggtatgtgcgtggtggctgacaagctgaat
ttcattcgctatttgtcacacttccgctgtgtacacagaggagcagtctttgccaagatg
aggactacaacagtgcgaaagttgctgcccgagtcctggggctttctctgccctgtgcac
actcctgatggagagccatgtggcttgatgaaccacatgactgctcactgtgagattgtg
acctcagtttatcccaccaccacactgcccgcccggctgtgctctctgggtgtaactcca
gtggacgctactcctggtcagccgtactcctgctgctaccctgtggtactggatggggct
gtgatcggctgggtggagaaagacctcgcaccctctctggtggagtctctccgcaggttt
aaggtcctgggtgagaagaagattcctccgtggactgagatcgttctggttcctcagact
ggtaaagccagcatgtacccgggcctgtacctcttcactacatcgtgtcgcatgatgcgg
cctgtccgcaaccttgccctgggcaaacaggagctcattggcactttcgagcaattgtac
cttaatgtagggatatttgagggtgatattgagcaggatgtgaccacacaccaggagctc
ttcccccacagcatgctcagcgtggtggctagcttcatccccttctctgatcataaccag
agccctaggaacatgtaccagtgccagatgggtaaacagactatgggttttcctctgcac
tcttaccaggaccgctctgataataaactctatcggctgcagactcctcagagtcctctg
gtccgaccaacgatgtatgaccactataacatggacaactatcccattggcacaaacgct
gtagtggccgtcatctcctatacaggctatgacatggaggatgccatgattgtgaacaag
tcatcatgggagcgtggctttgcccatggctctgtctataagactgaaatcatagacctg
tcagaaaaggtcaaaggacaggatggtgtggtgttcgggactaaaccgggtgaccctagg
gtgggtgaccgactggatgtcgatggacttccccctataggaacagtcctgaattatgga
gaccctttttacagctacatcaacctcaacacaggccagagctttgtcacctcattcaag
agtcaggagagttgtgtggtggacaacatcaaagtttgcagcaatgacgtaggcacaggt
cggttcaagcgcatctgcattacgatgcgtgtcccgcgcaacccgactataggagacaag
tttgctagcaggcatggtcaaaagggcatcttgagccgcctgtggccagccgaggacatg
ccgttcactgagagtggcatgaccccagacatcttgttcaatccacacggcttcccctcg
cgtatgaccattggtatgctgatcgaaagcatggcagggaaatcggcagccctccatggc
ctgtgccacgatgccacacccttcaccttctctgaggaaagctccgccctggagcacttt
ggtgacatgctgaaggcagcaggctacaattactatggcacggagcggctgtactcgggc
ctcagtggcctggagctggaggccgacattttcattggggtggtttactaccagcggctg
cgtcacatggtttccgacaagttccaggtgcggaccactggagccagggacaaggtgacc
aatcagccagttgggggcaggaacgtgcagggtggcatccgtttcggagagatggaacga
gacgccctgctggcccatggcacgtctttcctgctgcatgaccgccttttcaactgctct
gaccgctctgtggcccaggtgtgcatggactgcggcagcttgctgtcccccctgctggag
aaaccgccacctcattggtcagccacacgccatcgcaagaccgtctgcttattgtgtaaa
aagagtgactgcattgagacagtgtccgttccctacgtgtttcgctactttgtggctgaa
cttgcagcaatgaacatcaaaatcaaattagacgtgaagtga
DBGET
integrated database retrieval system
