Colossoma macropomum (tambaqui): 118810885
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Entry
118810885 CDS
T09004
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118810885 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118810885 (smarca5)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118810885 (smarca5)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
118810885 (smarca5)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
118810885 (smarca5)
RSF complex
118810885 (smarca5)
WICH complex
118810885 (smarca5)
B-WICH complex
118810885 (smarca5)
NORC complex
118810885 (smarca5)
BRF complex
118810885 (smarca5)
NuRF complex (fruit fly)
118810885 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
118810885
NCBI-ProteinID:
XP_036430901
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MSDREGGVEQPREEQRGPSEPGPAEDGTSDAGHDEPSEAVQDSGEQSSPVAEKPKVEQQA
GYEEKVKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQHLLSA
GDNRHRRTEQEEDEELLSESSKAANVCTRFDESPSYVKTGKLRDYQIRGLNWLISLYENG
INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAV
CLIGDRDERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ
KLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMAVLDKLLPKLKEQ
GSRVLIFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLS
TRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVHVFRFITDNTVEERIV
ERAEMKLRLDSIVIQQGRLLDPSMNKLGKDEMLSIIRHGATHVFASKESEITDEDIDGIL
ERGEKKTLEMNEKLSKLGESSLRNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYK
VPRNPDLPNSAQVQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWNKRDFNQFIKANEK
WGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRTSSAQKRKQD
GTPDGRGRKKKLKL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatagagagggtggcgtggagcaaccgcgggaagagcagcgaggaccaagcgaa
ccgggaccggcggaggatggcacctcggatgctggtcatgatgaaccgtcagaagcagtg
caggacagtggcgaacagtcatcacctgtggctgaaaaaccgaaggtggagcagcaggca
ggctacgaagagaaagtgaaaacagaccggacaaacagatttgagtacctgctaaagcag
actgaagtgtttgcccacttcatccagcctgctgcccagaagactcctacctctcctctg
aagatgaagcctggccgtcctcgcattaaaaaggatgagaaacagcatctcctttctgct
ggagacaaccgtcatcgtcgcactgagcaagaagaggatgaagagctgctcagtgaaagc
agcaaagctgccaatgtgtgcacacgctttgacgagtcaccatcctatgtgaaaacgggc
aaactgagagactatcagattcgtggattgaactggcttatttcactctatgagaatgga
atcaacggtatcctcgctgacgaaatgggtttggggaagactctacagaccatttctctg
ctaggctatatgaagcactacaggaacatccctggtcctcacatggtcttggtgcccaaa
tccaccctgtataactggatgaacgagtttaagcgctgggtgccctccctccgagctgtc
tgcctcattggagacagggatgagagaacggcatttatccgtgacactttgttgccggga
gagtgggacgtgtgcgtcacttcctatgagatgctaatcatcgagagggccgtctttaag
aagtttaactggagatacctggtcatagacgaggcccatcgtataaagaatgagaaatca
aagctttcagagattgtgcgagagttcaagaccaccaaccggctgctgctgacaggaacc
ccactgcagaacaacctgcacgaactctgggctctgcttaatttcctcctgcctgatgtc
ttcaactcttctgaggactttgattcctggtttgacaccaataactgtcttggagaccag
aaattagttgagcgtctacacactgtactgcgtcctttcctgctgaggcgtatcaaagcc
gatgtggagaaatctctccttccaaagaaagaaatcaagatgtatgtgggcctcagcaag
atgcagagagaatggtacacaaagatcctgatgaaggacattgacatcctgaactcagca
gggaagatggataagatgcgtctactgaatgtgttgatgcagctgagaaagtgctgcaat
cacccgtacctgtttgatggggctgagcctggcccgccctacaccactgacctccatctg
gtcgtcaacagtggcaagatggccgtcctcgataagctgctgcccaagctgaaggagcaa
ggttcacgtgtgctgatcttcagccagatgaccaggatgctggacattctggaagactac
tgcatgtggcgtaactatggttactgtcgtctggatgggcaaacaccacatgaggagaga
cagatctcaataaatgcctttaatgagcccaacagctccaagtttctcttcatgctgagc
accagggctggagggctgggtattaacctggccacagcagatgtggtcatcatttatgat
tctgactggaatcctcaagtggacctgcaggctatggatcgtgctcacaggattggtcag
aaaaagcaggtgcatgtgttccgttttatcaccgacaatacagtggaggagaggattgtt
gaacgcgctgaaatgaaactccgcttggactccatcgtcatccaacaaggaaggctgtta
gaccctagcatgaacaagctgggaaaagacgagatgttgtccatcattcgacatggtgcc
actcacgtcttcgcctccaaggagagtgaaattactgacgaagacattgatggcatcttg
gagagaggagagaagaagaccttggagatgaacgagaagctgtccaaattaggggaaagt
tctctgaggaatttcacaatggacacagaaaacagtgtgtacaactttgaaggtgaagat
tacagagaaaagaaaaaggtgatcacaaactggattgaacctcccaagagagagcgcaag
gcaaactatgctgttgatgcatatttccgagaggccctgcgagtcagcgagccaaaagcg
ccgaaggctcctcgacccccgaaacagccaaatgttcaagatttccagttcttcccccct
cggctttttgagctattagagaaagagattttgtactacaggaaaaccattggctacaag
gtgcccaggaaccctgacctgcccaactctgcgcaggtgcagaaagaggagcaagcgaag
atcgatgaggctgagcctctgaatgaggaagagttggaggagaaggagaatcttctttcc
cagggcttcaccatttggaacaagcgagacttcaaccagttcattaaggcaaatgaaaaa
tggggaagggatgatattgagaacatcgcccgtgaagtggaaggcaaaacacctgaggag
gtcatggagtactccgctgtattttgggagcgctgcaatgagctgcaggatattgagaag
atcatggcacagattgagaggggagaggccaggattcagaggaggatcagcatcaagaaa
gcactggactcaaagattggccggtacaaggcaccattccaccagctgaggatttcttat
gggaccaacaaggggaaaaactacactgaagaagaggaccgcttcctcatctgcatgctg
cataagctgggcttcgacaaagagagtgtttatgatgaactgcgccagtgtatacgcaac
tcgcctcagttccgttttgactggttcctgaaatcccgcactgctatggagctacagagg
aggtgtaacacactgatcaccctaattgaacgtgagaatatggagctggaagagagggag
aaggctgaaaagaagaaacggggacctcgcacttcttcagcccagaaacgcaagcaggat
gggaccccagatggacgtggccgtaagaagaagctgaagttatag
DBGET
integrated database retrieval system
