Colossoma macropomum (tambaqui): 118811919
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Entry
118811919 CDS
T09004
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118811919 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118811919 (sf3b1)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118811919 (sf3b1)
Spliceosome [BR:
cmao03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118811919 (sf3b1)
Complex B
118811919 (sf3b1)
Complex C
U2 SnRNP specific factors
118811919 (sf3b1)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
118811919 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
118811919
NCBI-ProteinID:
XP_036432440
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKTALREEGEQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEDDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHKPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQQLGKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAATKRKRRWDQTADQTPSATPKKVSSWDQADASAETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRSMKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLIYNDEKNPYVRYELEYFL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacatgaagacattgaggcgcagatcctggaaatccaggga
atgaagacagccctgcgggaggagggagagcagggtgtcggccttgattccactggatac
tacgaccaggagatttatggaggcagtgatagccgatttgctggatatgtcacctcaatt
gctgccaatgaacaggaggatgatgatgaagatgactcgtccacaagtttgctcgggcag
aagaaaccagggtaccatgctccggtggcaatactcaatgccattcctcagtctgatgag
cagtatgatccttttgctgagcacaaaccgcagaagatttcagaccgtgaagatgagtac
aagaaacgcagacaaaagatgatcatctcccctgagcgtcacgacccttttgcagatggg
ggcaaaacaccagatcccaagatgcaggtcaggacgtatatggacgtgatgaaggagcag
caactaggcaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggg
gacctgaaagcagttaatggctctgctgcgtctcaagctgccgctacaaagcgcaagcgt
cgttgggaccagactgctgaccaaactccaagtgctacaccaaaaaaggtgtccagctgg
gatcaagcagatgcttctgcagaaacaccaggacacacgcctgggcacacaccttccaac
agtcgctgggacgagacgcctggtcgacctaaaggaagcgagacgcctggagccactcca
agcacccgtatgtgggaccctacccccagccacacgcccgctggagctgccacacccggt
cggggagacacccctggacatgccacacctggccatggaggggccacttccagcgtgcgc
aagaatcgctgggatgagacaccaaagacagagagagaaacgccgggtcatggcagtggc
tgggctgaaactcctcgaacagacaggggagatgagtctgtaggggaaactccgacccct
ggagcgagcaaaagaaagtcccgctgggacgagactcctgctagtcagatgggttcttct
actcctctgctcactcctggaaagacccctattggcacacctgctatgaacatggccaca
ccaactccaggtcatctgatgagtatgacccctgagcagcttcaggcatggcgttgggag
agggagattgatgagcggaaccgtccactgactgatgaggagcttgatgctatgttccct
gagggatacaaggtgttgcccccaccagcaggctatgtgcctatccgcacccctgcccgt
aagttaactgccacgcctactccaattggcggcatgactggcttccatatgcagactgaa
gacagatctatgaaacagatgaacgatcaaccgtccggcaacctgcctttcctcaaacca
gacgacatccagtactttgacaaacttctggtggaggtggatgaatctactctgagccca
gaggagcaaaaagagcgcaagattatgaagctgctcctgaagattaaaaatggtacccct
ccaatgaggaaggccgccctcagacagatcacagacaaagccagggaatttggtgctgga
cccctcttcaatcagattctgcctctgctcatgtctccgacactagaggatcaagagcgc
catctgttggtgaaagttattgaccgcatcctatacaagctggatgacttggttcgtccg
tatgtccacaagatccttgtggtgattgagcccttgctgattgatgaggattactatgct
agagtggagggcagagagatcatctccaatttggcaaaggctgctggtctggccactatg
atctccacaatgagacctgatattgacaacatggacgagtatgtgagaaacacaactgct
cgtgcctttgccgttgttgcgtctgccttgggcattccatcccttctgcctttcctcaag
gctgtgtgcaaaagcaagaagtcctggcaggctcgacacacaggcatcaagatcgtgcag
cagattgccatcctcatgggctgtgccatcctgccccatctccgcagcttggtggagatc
attgaacatggtcttgtggatgagcagcagaaagtgcgaaccatcagtgctttggctatt
gctgctcttgctgaggctgccacaccctatggtattgagtcttttgactccgtgctgaag
cccctttggaagggtatccgacaacacagaggcaaaggtctggctgccttcttaaaagct
attggttacttgattccacttatggatgctgagtatgccaactactacacaagagaagtg
atgcttatccttatcagagagtttcagtctccagatgaagaaatgaagaagattgtgctg
aaggtggtgaaacagtgctgtggcacagatggtgtggaggccaactacatcaaaactgag
atcctgcctcctttcttcaagcacttctggcagcaccgtatggccttggacaggcgcaac
tacagacagttggtggacactacagtagaactggccaacaaagttggggccgcagaaatc
atttcgcgcatcgtggacgacttgaaggatgaagctgagcagtacagaaagatggtgatg
gagacaattgagaaaatcatggggaacctgggtgcagcagacattgaccacaaactagaa
gagcagcttattgatggtatcttgtatgccttccaagaacagactactgaggactctgtg
atgctgaatggttttggcacagtggtgaatgctctgggcaagcgagtcaagccttacctg
cctcagatttgcggtactgttctgtggcgtctcaataataaatctgcgaaagtccgtcag
caagctgccgacctcatctcgcgcacagctgtggtcatgaagacttgtcaagaggaaaaa
ctgatgggtcatctgggtgtagtactgtacgagtatttgggagaagagtatcccgaagtg
cttggaagcatccttggagcccttaaagctattgttaacgtgattggtatgcacaaaatg
acaccgcccatcaaagatttgcttcctcgattaacaccaattctgaagaacagacacgag
aaggtgcaggagaactgtattgatcttgtgggcagaattgctgacaggggtgcagagtat
gtgtctgccagagagtggatgcgaatctgttttgagctgctggagttgctaaaagctcat
aagaaagcaattcggagagccaccgtcaacacctttggttatattgctaaggcaatcggg
cctcacgatgtgcttgctactctactcaacaacttgaaagtgcaagagcgtcagaaccgt
gtgtgtacaacagtagccatagccatcgtggcagagacgtgttcaccattcactgtactc
ccagcactgatgaatgaataccgtgtaccagagctcaacgttcagaatggtgtgctcaag
tcgctctccttcttatttgaatatattggtgaaatgggaaaggactacatctatgctgtc
acaccattattggaggatgctctgatggacagagatcttgtacataggcagacagccagc
gctgtagtgcaacacatgtccctgggtgtgtatggatttggctgcgaggactccctgaac
cacttactcaactacgtttggcctaatgtctttgagacgtcgccgcatgttattcaagct
gtgatgggagcccttgagggccttcgcgttgctcttggaccatgccgtatgctgcagtac
tgcttgcagggtttgttccatccggcgcgtaaagtacgtgatgtgtactggaagatttat
aattccatttatattggctcccaggacgcattgattgcacattatccccttatctacaat
gatgagaagaacccttacgtccgctatgagctggagtacttcttgtga
DBGET
integrated database retrieval system
