Colossoma macropomum (tambaqui): 118812615
Help
Entry
118812615 CDS
T09004
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmao03000
]
118812615 (sox5)
Transcription factors [BR:
cmao03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118812615 (sox5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
118812615
NCBI-ProteinID:
XP_036433608
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MLTEPEIPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSK
VSPRSPRTLDSPPALHGSMEQESSKGLALSPYTQHNSSTSPSKQQQQPDDGSGRPGSEPG
SATALGTPERRKGSLADVVDTLKQRKMEELIKSEPEEAPSIERLLSKDWKDKLLAMGSGH
FGEIKGTPDSLAEKERQLMGMISQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQ
QDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPP
GFNYKPGCNDPYPLQLIPTSMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHGTVPQ
PNLATGTHSPTSGQSEKSRSSPPPKPKDEGAQPLNLSAKPKTSESKSPTSPASPQVPAMK
LGPGSLKHSAPSSIGGPAPRISSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKREQ
QVLDAKVAAVNSLTLNNGRSEKDKAALESLSQQLKQSEESKFTHAMMDFGMSGDSDGSPS
VSDSRMFREARGRGNGEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKA
MTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRSRRQEM
RQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPAPPLSGQPSYLS
VSKEEEPRIKEEELRMDESNGDAYDDFDYEDEDGDFGSDSENPIRAL
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgagcctgagatacctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacgagcagacagcgactggag
gatgaggaggttgacggacacgctgtcattcacttgcccctgagctcctactgcagcaag
gtgtcccctcgctcgccccgcaccctcgacagcccgcccgcactacacggcagcatggag
caggagagcagtaaaggcttggccctgagcccctacacccagcacaactcgtctacctca
cccagtaagcagcagcagcagccggacgacggctccgggcggccgggcagcgagcccggc
tcggccactgctctgggcactccggagaggcgcaagggcagcctggccgacgtagtggac
acgctgaagcagcgcaagatggaggagctgatcaagagcgagccggaggaggcccccagc
attgagaggctgctatccaaggattggaaggacaagctgctggccatgggctctggccac
tttggagagatcaaaggtaccccggacagcctggcggagaaggagcggcagctgatgggc
atgatcagccagctgagcagcctgagagagcagctactggccgcacatgaggagcagaag
aaactggccgcatcacagatagagaaacagaggcagcagatggagctcgccaagcagcag
caggaccagatcgctcggcaacagcagcagctcctgcagcagcaacacaaaatcaacctc
ctgcagcagcagatccagcaggtccagggtcagctgcctccactgatgatccccgtcttt
cctccggatcagaggaccttggcagcagccgctgcccagcagggattcctcttgcctcca
ggcttcaactacaaaccaggctgcaatgacccgtaccccctccagctgatccccaccagt
atggcagccgctgcggccgccacgcccggcctgggaccccttcagctccagcagctgtat
gcggctcagttggcagccatgcaggtgtctccgggggccaagcatggcaccgtgcctcag
cccaacctggcaaccggcacgcactcgcccaccagtggccagagcgagaagagcaggagc
agcccgccgcccaagcccaaggacgagggcgctcagcccctgaatctgtcagccaagcct
aagacatccgagagcaagtcacccacctcccccgcttccccacaggtccctgccatgaag
ctgggccccggatctctgaagcacagcgccccctccagcatcggaggacctgcacccaga
atcagctccatagacctgttgtcgtccatcacctcaggaggctatctgaatgaccacgag
gctgtgaccaaggccttccaggaggcccggcagatgaaggagcagctcaagagggagcag
caggttctggacgccaaagtggcagcagtcaacagcctgaccctcaacaacggacgctct
gagaaggataaggcagctctggagagcctgagtcagcagctgaaacagtccgaggagagc
aagttcactcacgccatgatggacttcggcatgagcggcgactccgacggcagccccagc
gtgtcagactccaggatgttccgcgaggcgcggggtcgcggcaacggcgagccacacatc
aagcggcccatgaacgctttcatggtgtgggcgaaggacgagcggaggaagatcctgcag
gctttccctgacatgcacaactccaacatcagcaaaatcctcggttcgcgctggaaagcc
atgactaacctggagaagcagccgtattatgaagagcaggcgcgcctcagtaagcagcac
ctggagaaataccccgactacaagtacaaaccgcggcccaagcgcacctgcctggtggac
ggcaagaagctgcgcatcggcgagtacaaggccatcatgcgcagccgccggcaggagatg
cgccagtacttcaccgtggggcagcaggcccagctgcctctgtcctcagcgggcgtggtg
tacccgggcgctctctccatggccggaatgccgtcgccccagatgccctcggagcactcc
agcatgtccagcagccccgagccggcccctccgctcagcggccagccctcttacctcagc
gtcagcaaggaggaggagcctcgcatcaaagaggaggagctgcggatggacgagagcaac
ggcgacgcctacgacgacttcgactacgaggacgaggacggagacttcggcagcgacagc
gagaacccaataagagcgctctga
DBGET
integrated database retrieval system
