Colossoma macropomum (tambaqui): 118813405
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Entry
118813405 CDS
T09004
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118813405 (ddx20)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118813405 (ddx20)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
118813405 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-GeneID:
118813405
NCBI-ProteinID:
XP_036434615
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MAASMRQAAHQIDTRTRTDDVLLSDGVEFSSLLLSKPVLEGLSASGFQRPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFATIALDSLVLENAATQVLVLAPTREIAVQIHAVVMAIGS
AMEGLECHVFIGGRPVSQDKLHLKKCHIAIGSPGRIKQLIEMGLLLTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLCRYMREPTFVRLNPTDPGLIG
LKQYYKLVHSHALPHKVFEEKVQNLLELFSKIPFNQALVFSNLHTRAQHLADVLSSKGLP
SVCISGSLSQEQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTLGIAVTYCCHGEEENKMMAIAQKCSLHLNQLPDPIPAGLMEEQCDWDITV
QPPSKSDLSFSVEPKVDRKKRATSEPAASKTSKQAQRTLSTKDQPEHHSPAKTQPPSSDR
KKSKKPAVGTEASVASPKAGAPDPNVEPSSALTRQEMQDALPKIPPLPSFKPPAQRPMSF
AEAVADFENFMTNGPGRSVEIIRLYGARDERTTTVNGQYKNHVAEVEPYPQDEKHGLLDG
ITCPSQRSVDSTSCRMPSSLTSDSSSSSGSESEMETEQKTDASASSSLSSAPQKQNSYRQ
PQLHSAPKHITEPSPSKASTAKQPVKSRPNQAKPQVKTHHPHYQSQAVHNQRLKSGPEKK
RAGKAAKADVARWKKDTGRQEDEEEEYSEEEEEDEQDYWRAYYRAWQEYYSPAYYYHSPY
NWLAAYRMNTVYMMEMMKH
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtccatgagacaagctgctcatcagatagacaccagaacacggacagacgat
gtcctactgtctgatggagtcgagttcagttctttactcctctcgaagcctgtgctggaa
ggcctgtcagcctccggctttcagagaccctcgcccatccagctgaaagcgattcctctg
ggccggtgtggactggatcttattgttcaggcaaaatctggcacaggaaagacctgtgtg
tttgccaccattgctctggactctctggtgctggagaatgctgccactcaggttcttgta
ctggcaccaaccagagagatcgctgtacagatccatgcagtggtcatggcaataggcagt
gccatggagggactggagtgccatgtgttcattggtggtcggcctgttagtcaggacaaa
ctccatctgaagaaatgtcacatcgctattggatcaccaggtcgtataaagcagctgata
gagatggggcttctcctgacggcgagtatccgactgtttgttctggacgaggcagataag
ctgctagaggagggcagcttccaggagcagatcaactggatcttctcctctctgccagtg
aataaacagatgttggcactctctgccacctacccagaatccttagcacagcacttgtgc
agatacatgcgagaaccaacattcgtgcggctgaatcccactgaccccggactcatcggc
ctgaagcagtactataagctggtgcactcgcatgctctgccccataaggtctttgaggaa
aaggtgcagaatcttctggaactgttcagtaaaattccctttaaccaggcactggttttc
tccaatctgcacacaagagcgcagcatctggctgatgttctttcctccaaaggcctgccc
tcagtctgcatctctggcagcctgagtcaggaacagaggctagaggcgatgtctaagcta
aagcagtatcagtgtagagttcttatctccactgacttaacctctcgaggtatagatgca
gagaaagtgaatttggtgattaatctggacgttcctcaggactgggagacatacatgcac
aggattggacgtgcaggacgcttcggcactctggggattgcagtgacctactgttgtcat
ggagaagaagagaacaaaatgatggccatcgctcagaagtgcagcctgcatctcaaccaa
ttaccagatccaatccctgccggactcatggaggagcagtgtgactgggacattactgtc
cagcctccctcaaaatctgacctttctttttccgttgagcccaaagtggacaggaagaaa
cgggccacatctgaaccagcagcctccaaaacctccaaacaggctcagcgcacactctcc
actaaagaccagcctgagcatcacagtccagctaagacccaaccacctagcagtgaccgg
aagaagagcaaaaagcctgctgtgggtactgaagcttcagtggcttcacccaaagcagga
gcccccgacccaaacgtggagccttcatcagctctcaccagacaagaaatgcaagatgct
ctgcccaaaatccctccccttccatcttttaagcccccagcacagagaccaatgtccttc
gctgaagctgtggctgactttgagaactttatgacgaatggtcctggtagatctgttgaa
attataaggctgtatggagctcgtgacgagagaaccactacagttaatggtcagtataaa
aatcatgttgctgaagttgagccatatcctcaggatgaaaagcatggcttactggacgga
atcacttgtccatctcagaggtccgtggattcaacctcttgccgtatgccttctagtttg
acatctgacagctcttcttcttcagggagtgagtcagagatggaaactgaacagaaaacg
gatgcttcggcatccagctcgctgtccagtgccccacagaagcagaacagctacaggcaa
ccacagctacacagtgcaccaaagcacattacggaaccatccccgtctaaagccagtaca
gcaaaacagcctgtcaaatccaggccaaatcaggccaagcctcaagtaaagactcatcat
cctcattatcagtctcaagctgttcataaccagcgtttaaaatcagggcctgagaaaaag
agggcagggaaggcagccaaggcagatgtggccagatggaagaaggacacaggaagacag
gaggatgaggaggaggaatactctgaggaagaggaggaggacgaacaggactattggaga
gcttattacagagcatggcaggagtattacagcccagcctattactaccactcaccatat
aactggctagctgcgtaccgcatgaacacagtctacatgatggaaatgatgaagcactga
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