Colossoma macropomum (tambaqui): 118814322
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Entry
118814322 CDS
T09004
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
cmao04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118814322 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118814322 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118814322 (sympk)
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118814322 (sympk)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118814322 (sympk)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118814322 (sympk)
U7-dependent histone pre-mRNA processing factors
118814322 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Cnd1
V-ATPase_H_C
Motif
Other DBs
NCBI-GeneID:
118814322
NCBI-ProteinID:
XP_036435764
LinkDB
All DBs
Position
Unknown
AA seq
1248 aa
AA seq
DB search
MASGSGERQHASVASQFFTGAEEAAIDMTTSEKVVDLLNQAAFMSTDDKLTALKQVQELI
INKDPSLLDNFLDEMIAFQTDKSIEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDES
VNVVKKAILTLTQLYKVALQWLVRSKSVSEMQEACWDMVTHMKEEVLALLDSDNDGVRTH
AIKFTESLIITLSPRTPDSDVPKKQEGDISLDRLPKDHSYIRYDVLSEEGKSALDKLLKF
MVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLK
LHLVSVLRHPSSVDFHSQISTLLLDLGMAQGDIARCAPAAAQPRKRPRHEPYSEGKRIKI
EPTLIEDDEDKEEPAPVVVPKPSSTTGTQSAIDLTAEFLLPLLTPENVANLVLISMVYLP
EAMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLEQCRARDEEGKEGESEA
GVEESSSKDPIIIRKVSAVSLGQAISVVGAYKSPATEETPQAKKLPEPIMPSTQPKAPGS
SGRKKVFRLADVVQPLSDSQLEKLTNMAVKRILQAEKAIARSGMSQVRVKLLARLMTQFE
GAMKDDMLRFILEDMRARSDLAFSLLYQEYNQYLSQLPSSSLDSYEHCLFALLSGLQERP
EQRDGLFTKLVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELILKRPSRQFQYLHVL
LDLSSHEKEKVRSTALTFIKRLYEKDHLREYIEKFALNYMQLLVHPNPPSLLFGVGDDTE
VASPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMN
SPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVING
LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLISLHNIDSTKC
DMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMDQNSLPMLFMRTVIQSLTMYPRLGGFVM
NILTRLIPKQVWKYPKVWEGFVKCCQRTKPQSYTVLLQLPPAQLASVFERCPEMREPLLQ
HVRSFTPHQQAHIPSSIIAILEATNRMQEPEPQPEPDHVEAVEEREMHLQQVGMPVAQAE
TPAPTVFAAHEPAPQLGLTRREEEEEPMEEGEAGPECLEVADEATTQIKALEADPGPNDV
PQEKAEEPMEQTFTESADASDQPQEGLEDRIAEHETAADAEISRKEEN
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggctccggagaaaggcagcacgccagtgttgcatcccagttcttcactggc
gcggaggaggcagccatcgatatgaccaccagtgaaaaggttgtagatctgctgaaccag
gctgcttttatgtccactgatgataaacttactgcacttaaacaggtgcaagagttgatt
attaataaggatccctccttgcttgataacttcctggatgagatgatagcctttcagacg
gacaagtctattgaagtgcgaaaatttgtcattggcttcatcgaggaggcatgtaaaagg
gataatgagctgttgctgaagctgatagcgaatctgaacatgctgctaaaggacgagagt
gtgaacgtcgtgaagaaggccattctcacactcactcagctgtacaaagtggctctgcag
tggctggtgcgctcgaaaagtgtatctgaaatgcaggaggcatgctgggatatggtgacc
catatgaaggaggaggttctggctctgcttgattcagacaatgatggagttcgcacccac
gccatcaaattcactgaatccctcatcatcaccctgtcaccacgaacgcccgactcagat
gtacctaagaagcaggagggggacatcagccttgacaggctcccaaaagaccactcatac
attcgctacgatgttctctctgaggaggggaagtcagccctagataagctcctgaagttc
atggtacaccccgctatctccagcattaatctgaccactgctctgggctcactggccacg
ctggcccggcaaaggcccatgttcatgtctgaggtggtgcaggcctacgagactctgcat
gcaaacttgcccccaacactggccaagtctcaggtgagcagcgtgcggaagaacctcaag
ctgcacctggtgtctgtactgcgacaccccagcagtgtggacttccacagccagatctcc
acgttgctgctggatttgggcatggcccagggtgacatagcccgctgcgcacctgctgct
gcccagccccgcaagagaccccgccatgagccctacagcgagggcaagaggataaagata
gaacccacactgattgaggatgatgaggataaagaagaaccagctcctgttgttgtgccc
aagccttcatccaccacaggcacacagtcggccatagacctcactgctgagttcctgctc
cctttgctcacaccggaaaacgtagccaacctggtgctcattagtatggtttacctgccc
gaagccatgccagcctcctttcaggccacctacacaccagtggagtcagcaggcacggat
gcccagatcaaacatctggccaggctcatggccacacagatgactgcagctgggcttggg
ccaggtcttgagcagtgcagggcacgagatgaggagggaaaagagggagagagcgaagcc
ggagtggaggagtctagctccaaagaccccatcattatccggaaagtttctgctgtgtct
ctgggacaggccatctctgtggtgggggcctataagagcccagctaccgaggagacgcct
caggccaagaaacttccagaacccataatgccctccacacagccgaaagcacctgggagc
agtggacgaaaaaaagtcttcagattagctgatgtagtccagcccttgtctgattcacag
cttgaaaagttaacaaatatggctgtcaaacgcatccttcaagcagagaaagccattgca
cgtagtggaatgtcacaagttcgtgtgaagctgttggcgaggttaatgacacagttcgaa
ggggcgatgaaggacgacatgctgcgtttcatcctagaggatatgcgggcccggagtgac
ctggctttttctctgctgtaccaggaatacaaccagtacctgagccagctaccctcgagc
tcactggacagctatgaacactgccttttcgccctgctgtctggcctgcaggaacgacca
gaacagagagatgggctgtttaccaagctggtgctggaagctcctctgattacagagtct
gctctggaggtgatccgacgctactgtgaagatgagtctcgcgtttacctgggcatgacc
actctgaaagagctcatactcaaacgcccttccagacagttccagtaccttcacgttctg
ctggaccttagctctcacgagaaagagaaggtgcgctccactgccctcaccttcatcaag
cgtttgtatgagaaggatcacctgagagaatacatcgagaagtttgctctgaactacatg
cagctgcttgtgcacccaaaccctccttcattactgtttggagttggagatgacacagag
gtggcatctccttggacagaggaaacagtgaggcagtgcctttatctgtacctctccctt
ctacctctcaaccatcgcctggttcatgagctagctgccgtctacaccgaggccatcgct
gacataaaacgcagcgtgctccgtgtcatagagcagcctatccgaggaatgggtatgaat
tctcctgatctgctgctgctggtggagaactgtcccaagggggcagagactctggtcact
cgctgtctccacattctgactgacaaagtgcctccatctccagacttggtggagagagtg
agggatctttatcacaaacgagtgccagatgttcgtttccttatcccggtcatcaacggc
ctagagaagaaagaggtgatccaggcgttgcccaaactcattaagctcaaccccatagta
gtcaaggaagtcttcaaccgcctcctgggcacacagcacagtgagggtagttcctctatg
tctcctctgacccctggtgagctccttatctcgctccacaatatcgattccaccaagtgt
gacatgaagtccatcatcaaagccacaaacctgtgcttcggtgagaagaacgtgtacacg
tcagaggtcctggctgtggtgatgcagcagttgatggatcagaattctctccccatgctg
ttcatgcgcacagtcatccagtcgctcacaatgtacccccgcctgggcggcttcgtcatg
aacatcctcacccgccttatccccaaacaggtgtggaagtatcccaaggtgtgggaaggc
tttgtgaagtgctgccagcgcaccaagccacagtcctacactgtgctcttgcagctgccg
cccgcacagctggccagtgtgtttgagcgctgcccggaaatgagggagcctctcctgcaa
cacgtccgctctttcaccccgcaccagcaagcccatatcccatcctccatcatcgctatt
ctggaagctaccaacagaatgcaggagcctgagccacagcccgaacctgaccacgtggag
gcagtggaggagagagagatgcatctccagcaagttgggatgcctgtagcacaagcagaa
actccagccccaactgtatttgctgctcatgagccagcacctcagttaggattgaccaga
agggaggaagaggaggaacctatggaggaaggagaggctggtccagaatgtctggaggta
gctgatgaagccacaacacaaattaaagcacttgaagctgacccagggcccaacgacgtt
cctcaggaaaaggcagaggaaccaatggagcagacttttactgaatctgcagatgcaagt
gaccagccacaagaggggctggaggaccgtatagcagaacatgagacagcagcagatgct
gaaataagcagaaaggaggagaactga
DBGET
integrated database retrieval system
