Colossoma macropomum (tambaqui): 118814595
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Entry
118814595 CDS
T09004
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118814595 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118814595 (prpf4)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118814595 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
WD_LRWD1
Ge1_WD40
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
118814595
NCBI-ProteinID:
XP_036436178
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MSDEDEAPVVKKSRIFYGSIEEKEKERLGREGATASGKDAIKAGIEAGNINISSGESLEI
EDRVNERQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKDEEKAKRSQEDSQQTWYHEGPETLKDARLWLAKYSLPRAVKRLDT
ARALKDIPESTRTVRQQELHKALRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNVPDCSLVRTLRGHNTNVGAISFHPQATLTLKKSDVNMASCAADGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTACYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEIYGINFSPNGFHVATGSGDNTCKVWD
LRNRKCVYTIPAHQNLLSSVKFQPIDGHFLLTGAYDNTAKVWTHPGWSPLRTLAGHEGKV
MGLDMSPDGQLIATCSYDRTFKLWVSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaggatgaagctccagtggtgaaaaagtcgcggatcttttatggaagtatt
gaagaaaaggagaaggagcgtcttggaagagagggagccactgcctcaggcaaagacgcc
attaaggctggtattgaggctggcaatattaacatctcctctggtgagtcactggagata
gaggatcgtgtgaatgagcggcaggcagaggtgttggctgaatttgagcgcaggaaaaga
gcccgacaaattacagtctctactgatgacactgaagtcaaagcttgtctgcgtgctctt
ggagagccaattacactgtttggcgagggccctgctgagagacgagagagattgcgaaat
atcttatcagtagtaggtcctgatgccctgaagaaatctaagaaggatgaagagaaagca
aagcgttcccaggaggactctcagcagacatggtaccatgagggccccgagactctgaag
gacgcacggctctggctagcaaaatactcattacccagagctgtaaagaggttagacact
gcacgtgctctaaaagatattccggaatctacacgcacagtacggcagcaagagcttcac
aaggctctcaggaacctgaacaacttctgcagtcagattggagatgatcgcccaatatcc
tattgccagttcagccctaactccaaactgctggtgactgcatcttggagcggtctatgc
aagctctggaatgtcccagactgcagcctcgttcgtacattaaggggtcacaatacaaat
gttggagccattagcttccatccacaggccacactcactctcaagaagtcagatgtcaac
atggcttcctgtgctgcagatggatctgttaaattgtggagtttggacagtgatgagccc
gttgcagacattgagggccactccatgagggtggctcgagtagcatggcacccttctggc
cggtttctgggcacagcatgttatgataactcatggcgactgtgggatcttgaagtccag
gaggagattcttcatcaagaaggccacagtaaaggtgttcatgacctgcatttccatcct
gacggttccttagcaggaactggtggtctggactcctttggtcgcgtatgggacttgaga
actggtcgctgtgtcatgttcctggaggggcatctcaaagaaatatacgggatcaacttc
tctccaaatggttttcatgtggccacagggagtggggacaacacgtgtaaagtatgggac
ctgcggaacagaaagtgtgtatacacaatccctgctcaccagaatctgttgtcttcagtc
aaattccagcctatagatggtcatttcttgctgactggtgcttatgacaatacggccaaa
gtgtggacccaccctggctggtctccactgaggaccctggcggggcatgagggaaaggtg
atggggctggatatgtctcctgatggacagcttattgccacctgctcctatgaccgcacc
tttaaactctgggtgtctgagtga
DBGET
integrated database retrieval system
